518 lines
21 KiB
Python
518 lines
21 KiB
Python
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import warnings
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from typing import Iterable, List, NamedTuple, Tuple, Union
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import torch
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from torch import Tensor
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from ... import _VF
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from ..._jit_internal import Optional
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__all__ = ['PackedSequence', 'invert_permutation', 'pack_padded_sequence', 'pad_packed_sequence', 'pad_sequence',
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'unpad_sequence', 'pack_sequence', 'unpack_sequence']
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class PackedSequence_(NamedTuple):
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data: torch.Tensor
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batch_sizes: torch.Tensor
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sorted_indices: Optional[torch.Tensor]
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unsorted_indices: Optional[torch.Tensor]
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def bind(optional, fn):
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if optional is None:
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return None
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return fn(optional)
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class PackedSequence(PackedSequence_):
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r"""Holds the data and list of :attr:`batch_sizes` of a packed sequence.
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All RNN modules accept packed sequences as inputs.
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Note:
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Instances of this class should never be created manually. They are meant
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to be instantiated by functions like :func:`pack_padded_sequence`.
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Batch sizes represent the number elements at each sequence step in
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the batch, not the varying sequence lengths passed to
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:func:`pack_padded_sequence`. For instance, given data ``abc`` and ``x``
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the :class:`PackedSequence` would contain data ``axbc`` with
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``batch_sizes=[2,1,1]``.
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Attributes:
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data (Tensor): Tensor containing packed sequence
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batch_sizes (Tensor): Tensor of integers holding
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information about the batch size at each sequence step
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sorted_indices (Tensor, optional): Tensor of integers holding how this
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:class:`PackedSequence` is constructed from sequences.
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unsorted_indices (Tensor, optional): Tensor of integers holding how this
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to recover the original sequences with correct order.
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.. note::
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:attr:`data` can be on arbitrary device and of arbitrary dtype.
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:attr:`sorted_indices` and :attr:`unsorted_indices` must be ``torch.int64``
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tensors on the same device as :attr:`data`.
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However, :attr:`batch_sizes` should always be a CPU ``torch.int64`` tensor.
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This invariant is maintained throughout :class:`PackedSequence` class,
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and all functions that construct a :class:`PackedSequence` in PyTorch
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(i.e., they only pass in tensors conforming to this constraint).
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"""
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def __new__(cls, data, batch_sizes=None, sorted_indices=None, unsorted_indices=None):
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return super().__new__(
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cls,
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*_packed_sequence_init_args(data, batch_sizes, sorted_indices,
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unsorted_indices))
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# NOTE [ device and dtype of a PackedSequence ]
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#
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# See the note above in doc string (starting with ":attr:`data` can be on
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# arbitrary device...").
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def pin_memory(self):
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# Why not convert `batch_sizes`?
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# See NOTE [ device and dtype of a PackedSequence ]
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return type(self)(self.data.pin_memory(), self.batch_sizes,
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bind(self.sorted_indices, lambda t: t.pin_memory()),
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bind(self.unsorted_indices, lambda t: t.pin_memory()))
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def cuda(self, *args, **kwargs):
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# Tests to see if 'cuda' should be added to kwargs
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ex = torch.tensor((), dtype=self.data.dtype, device=self.data.device).to(*args, **kwargs)
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if ex.is_cuda:
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return self.to(*args, **kwargs)
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return self.to(*args, device='cuda', **kwargs)
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def cpu(self, *args, **kwargs):
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ex = torch.tensor((), dtype=self.data.dtype, device=self.data.device).to(*args, **kwargs)
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if ex.device.type == 'cpu':
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return self.to(*args, **kwargs)
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return self.to(*args, device='cpu', **kwargs)
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def double(self):
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return self.to(dtype=torch.double)
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def float(self):
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return self.to(dtype=torch.float)
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def half(self):
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return self.to(dtype=torch.half)
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def long(self):
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return self.to(dtype=torch.long)
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def int(self):
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return self.to(dtype=torch.int)
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def short(self):
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return self.to(dtype=torch.short)
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def char(self):
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return self.to(dtype=torch.int8)
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def byte(self):
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return self.to(dtype=torch.uint8)
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def to(self, *args, **kwargs):
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r"""Perform dtype and/or device conversion on `self.data`.
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It has similar signature as :meth:`torch.Tensor.to`, except optional
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arguments like `non_blocking` and `copy` should be passed as kwargs,
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not args, or they will not apply to the index tensors.
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.. note::
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If the ``self.data`` Tensor already has the correct :class:`torch.dtype`
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and :class:`torch.device`, then ``self`` is returned.
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Otherwise, returns a copy with the desired configuration.
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"""
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# Why not convert `batch_sizes`?
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# See NOTE [ device and dtype of a PackedSequence ]
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data = self.data.to(*args, **kwargs)
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if data is self.data:
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return self
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else:
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# Does not forward device or dtype arg/kwargs, device is set from data.device
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kwargs = dict(filter(lambda t: t[0] != 'device' and t[0] != 'dtype', kwargs.items()))
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sorted_indices = bind(self.sorted_indices, lambda t: t.to(data.device, **kwargs))
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unsorted_indices = bind(self.unsorted_indices, lambda t: t.to(data.device, **kwargs))
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return type(self)(data, self.batch_sizes, sorted_indices, unsorted_indices)
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@property
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def is_cuda(self):
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r"""Return true if `self.data` stored on a gpu."""
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return self.data.is_cuda
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def is_pinned(self):
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r"""Return true if `self.data` stored on in pinned memory."""
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return self.data.is_pinned()
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# TorchScript doesn't support constructors on named tuples, so we use this helper
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# method to construct PackedSequence
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def _packed_sequence_init_args(
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data: Tensor,
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batch_sizes: Optional[Tensor] = None,
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sorted_indices: Optional[Tensor] = None,
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unsorted_indices: Optional[Tensor] = None,
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) -> Tuple[Tensor, Tensor, Optional[Tensor], Optional[Tensor]]:
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# NB: if unsorted_indices is provided, it should be the inverse permutation
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# to sorted_indices. Don't assert it here because the PackedSequence ctor
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# should only be used internally.
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if unsorted_indices is None:
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unsorted_indices = invert_permutation(sorted_indices)
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# support being called as `PackedSequence(data, batch_sizes, sorted_indices)`
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if batch_sizes is not None:
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# TODO: Re-enable this check (.type isn't supported in TorchScript)
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if batch_sizes.device.type != 'cpu':
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raise ValueError(
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"batch_sizes should always be on CPU. "
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"Instances of PackedSequence should never be created manually. "
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"They should be instantiated by functions like pack_sequence "
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"and pack_padded_sequences in nn.utils.rnn. "
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"https://pytorch.org/docs/stable/nn.html#torch.nn.utils.rnn.pack_sequence")
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return data, batch_sizes, sorted_indices, unsorted_indices
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# support being called as `PackedSequence((data, batch_sizes), *, sorted_indices)`
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else:
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assert isinstance(data, (list, tuple)) and len(data) == 2
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return data[0], data[1], sorted_indices, unsorted_indices
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def _packed_sequence_init(
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data: Tensor,
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batch_sizes: Optional[Tensor] = None,
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sorted_indices: Optional[Tensor] = None,
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unsorted_indices: Optional[Tensor] = None,
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) -> PackedSequence:
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data, batch_sizes, sorted_indices, unsorted_indices = _packed_sequence_init_args(
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data, batch_sizes, sorted_indices, unsorted_indices)
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return PackedSequence(data, batch_sizes, sorted_indices, unsorted_indices)
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def invert_permutation(permutation: Optional[Tensor]) -> Optional[Tensor]:
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if permutation is None:
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return None
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output = torch.empty_like(permutation, memory_format=torch.legacy_contiguous_format)
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output.scatter_(0, permutation,
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torch.arange(0, permutation.numel(), device=permutation.device))
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return output
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def pack_padded_sequence(
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input: Tensor,
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lengths: Tensor,
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batch_first: bool = False,
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enforce_sorted: bool = True,
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) -> PackedSequence:
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r"""Packs a Tensor containing padded sequences of variable length.
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:attr:`input` can be of size ``T x B x *`` where `T` is the length of the
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longest sequence (equal to ``lengths[0]``), ``B`` is the batch size, and
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``*`` is any number of dimensions (including 0). If ``batch_first`` is
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``True``, ``B x T x *`` :attr:`input` is expected.
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For unsorted sequences, use `enforce_sorted = False`. If :attr:`enforce_sorted` is
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``True``, the sequences should be sorted by length in a decreasing order, i.e.
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``input[:,0]`` should be the longest sequence, and ``input[:,B-1]`` the shortest
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one. `enforce_sorted = True` is only necessary for ONNX export.
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Note:
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This function accepts any input that has at least two dimensions. You
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can apply it to pack the labels, and use the output of the RNN with
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them to compute the loss directly. A Tensor can be retrieved from
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a :class:`PackedSequence` object by accessing its ``.data`` attribute.
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Args:
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input (Tensor): padded batch of variable length sequences.
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lengths (Tensor or list(int)): list of sequence lengths of each batch
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element (must be on the CPU if provided as a tensor).
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batch_first (bool, optional): if ``True``, the input is expected in ``B x T x *``
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format.
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enforce_sorted (bool, optional): if ``True``, the input is expected to
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contain sequences sorted by length in a decreasing order. If
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``False``, the input will get sorted unconditionally. Default: ``True``.
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Returns:
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a :class:`PackedSequence` object
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"""
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if not isinstance(lengths, torch.Tensor):
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if torch._C._get_tracing_state():
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warnings.warn('pack_padded_sequence has been called with a Python list of '
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'sequence lengths. The tracer cannot track the data flow of Python '
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'values, and it will treat them as constants, likely rendering '
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'the trace incorrect for any other combination of lengths.',
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stacklevel=2)
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lengths = torch.as_tensor(lengths, dtype=torch.int64, device='cpu')
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else:
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lengths = lengths.to(dtype=torch.int64)
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if enforce_sorted:
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sorted_indices = None
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else:
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lengths, sorted_indices = torch.sort(lengths, descending=True)
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sorted_indices = sorted_indices.to(input.device)
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batch_dim = 0 if batch_first else 1
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input = input.index_select(batch_dim, sorted_indices)
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data, batch_sizes = \
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_VF._pack_padded_sequence(input, lengths, batch_first)
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return _packed_sequence_init(data, batch_sizes, sorted_indices, None)
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def pad_packed_sequence(
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sequence: PackedSequence,
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batch_first: bool = False,
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padding_value: float = 0.0,
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total_length: Optional[int] = None,
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) -> Tuple[Tensor, Tensor]:
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r"""Pad a packed batch of variable length sequences.
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It is an inverse operation to :func:`pack_padded_sequence`.
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The returned Tensor's data will be of size ``T x B x *``, where `T` is the length
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of the longest sequence and `B` is the batch size. If ``batch_first`` is True,
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the data will be transposed into ``B x T x *`` format.
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Example:
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>>> from torch.nn.utils.rnn import pack_padded_sequence, pad_packed_sequence
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>>> seq = torch.tensor([[1, 2, 0], [3, 0, 0], [4, 5, 6]])
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>>> lens = [2, 1, 3]
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>>> packed = pack_padded_sequence(seq, lens, batch_first=True, enforce_sorted=False)
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>>> packed
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PackedSequence(data=tensor([4, 1, 3, 5, 2, 6]), batch_sizes=tensor([3, 2, 1]),
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sorted_indices=tensor([2, 0, 1]), unsorted_indices=tensor([1, 2, 0]))
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>>> seq_unpacked, lens_unpacked = pad_packed_sequence(packed, batch_first=True)
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>>> seq_unpacked
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tensor([[1, 2, 0],
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[3, 0, 0],
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[4, 5, 6]])
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>>> lens_unpacked
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tensor([2, 1, 3])
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.. note::
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:attr:`total_length` is useful to implement the
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``pack sequence -> recurrent network -> unpack sequence`` pattern in a
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:class:`~torch.nn.Module` wrapped in :class:`~torch.nn.DataParallel`.
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See :ref:`this FAQ section <pack-rnn-unpack-with-data-parallelism>` for
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details.
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Args:
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sequence (PackedSequence): batch to pad
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batch_first (bool, optional): if ``True``, the output will be in ``B x T x *``
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format.
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padding_value (float, optional): values for padded elements.
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total_length (int, optional): if not ``None``, the output will be padded to
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have length :attr:`total_length`. This method will throw :class:`ValueError`
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if :attr:`total_length` is less than the max sequence length in
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:attr:`sequence`.
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Returns:
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Tuple of Tensor containing the padded sequence, and a Tensor
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containing the list of lengths of each sequence in the batch.
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Batch elements will be re-ordered as they were ordered originally when
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the batch was passed to ``pack_padded_sequence`` or ``pack_sequence``.
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"""
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max_seq_length = sequence.batch_sizes.size(0)
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if total_length is not None:
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if total_length < max_seq_length:
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raise ValueError("Expected total_length to be at least the length "
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"of the longest sequence in input, but got "
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f"total_length={total_length} and max sequence length being {max_seq_length}"
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)
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max_seq_length = total_length
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padded_output, lengths = _VF._pad_packed_sequence(
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sequence.data, sequence.batch_sizes, batch_first, padding_value, max_seq_length)
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unsorted_indices = sequence.unsorted_indices
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if unsorted_indices is not None:
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batch_dim = 0 if batch_first else 1
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return padded_output.index_select(batch_dim, unsorted_indices), lengths[unsorted_indices.cpu()]
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return padded_output, lengths
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# NOTE: .pyi stub allows Iterable[Tensor], but for JIT-compatibility we need to be more restrictive here.
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def pad_sequence(
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sequences: Union[Tensor, List[Tensor]],
|
||
|
|
batch_first: bool = False,
|
||
|
|
padding_value: float = 0.0,
|
||
|
|
) -> Tensor:
|
||
|
|
r"""Pad a list of variable length Tensors with ``padding_value``.
|
||
|
|
|
||
|
|
``pad_sequence`` stacks a list of Tensors along a new dimension,
|
||
|
|
and pads them to equal length. For example, if the input is a list of
|
||
|
|
sequences with size ``L x *`` and ``batch_first`` is False, the output is
|
||
|
|
of size ``T x B x *``.
|
||
|
|
|
||
|
|
`B` is batch size. It is equal to the number of elements in ``sequences``.
|
||
|
|
`T` is length of the longest sequence.
|
||
|
|
`L` is length of the sequence.
|
||
|
|
`*` is any number of trailing dimensions, including none.
|
||
|
|
|
||
|
|
Example:
|
||
|
|
>>> from torch.nn.utils.rnn import pad_sequence
|
||
|
|
>>> a = torch.ones(25, 300)
|
||
|
|
>>> b = torch.ones(22, 300)
|
||
|
|
>>> c = torch.ones(15, 300)
|
||
|
|
>>> pad_sequence([a, b, c]).size()
|
||
|
|
torch.Size([25, 3, 300])
|
||
|
|
|
||
|
|
Note:
|
||
|
|
This function returns a Tensor of size ``T x B x *`` or ``B x T x *``
|
||
|
|
where `T` is the length of the longest sequence. This function assumes
|
||
|
|
trailing dimensions and type of all the Tensors in sequences are same.
|
||
|
|
|
||
|
|
Args:
|
||
|
|
sequences (list[Tensor]): list of variable length sequences.
|
||
|
|
batch_first (bool, optional): output will be in ``B x T x *`` if True, or in
|
||
|
|
``T x B x *`` otherwise. Default: False.
|
||
|
|
padding_value (float, optional): value for padded elements. Default: 0.
|
||
|
|
|
||
|
|
Returns:
|
||
|
|
Tensor of size ``T x B x *`` if :attr:`batch_first` is ``False``.
|
||
|
|
Tensor of size ``B x T x *`` otherwise
|
||
|
|
"""
|
||
|
|
if not (torch.jit.is_tracing() or torch.jit.is_scripting()):
|
||
|
|
# JIT doesn't support `Iterable`
|
||
|
|
if not isinstance(sequences, Iterable):
|
||
|
|
msg = ('pad_sequence: Expected iterable for input sequences, but got arg of type: '
|
||
|
|
f'{type(sequences)}')
|
||
|
|
raise RuntimeError(msg)
|
||
|
|
|
||
|
|
# In JIT context this leads to,
|
||
|
|
# RuntimeError: cannot statically infer the expected size of a list in this context
|
||
|
|
sequences = tuple(sequences)
|
||
|
|
else:
|
||
|
|
# For JIT, we only support Union[Tensor, Tuple[Tensor]]
|
||
|
|
if isinstance(sequences, torch.Tensor):
|
||
|
|
sequences = sequences.unbind(0)
|
||
|
|
|
||
|
|
# assuming trailing dimensions and type of all the Tensors
|
||
|
|
# in sequences are same and fetching those from sequences[0]
|
||
|
|
return torch._C._nn.pad_sequence(sequences, batch_first, padding_value)
|
||
|
|
|
||
|
|
|
||
|
|
def unpad_sequence(
|
||
|
|
padded_sequences: Tensor,
|
||
|
|
lengths: Tensor,
|
||
|
|
batch_first: bool = False,
|
||
|
|
) -> List[Tensor]:
|
||
|
|
r"""Unpad padded Tensor into a list of variable length Tensors.
|
||
|
|
|
||
|
|
``unpad_sequence`` unstacks padded Tensor into a list of variable length Tensors.
|
||
|
|
|
||
|
|
Example:
|
||
|
|
>>> from torch.nn.utils.rnn import pad_sequence, unpad_sequence
|
||
|
|
>>> a = torch.ones(25, 300)
|
||
|
|
>>> b = torch.ones(22, 300)
|
||
|
|
>>> c = torch.ones(15, 300)
|
||
|
|
>>> sequences = [a, b, c]
|
||
|
|
>>> padded_sequences = pad_sequence(sequences)
|
||
|
|
>>> lengths = torch.as_tensor([v.size(0) for v in sequences])
|
||
|
|
>>> unpadded_sequences = unpad_sequence(padded_sequences, lengths)
|
||
|
|
>>> torch.allclose(sequences[0], unpadded_sequences[0])
|
||
|
|
True
|
||
|
|
>>> torch.allclose(sequences[1], unpadded_sequences[1])
|
||
|
|
True
|
||
|
|
>>> torch.allclose(sequences[2], unpadded_sequences[2])
|
||
|
|
True
|
||
|
|
|
||
|
|
Args:
|
||
|
|
padded_sequences (Tensor): padded sequences.
|
||
|
|
lengths (Tensor): length of original (unpadded) sequences.
|
||
|
|
batch_first (bool, optional): whether batch dimension first or not. Default: False.
|
||
|
|
|
||
|
|
Returns:
|
||
|
|
a list of :class:`Tensor` objects
|
||
|
|
"""
|
||
|
|
unpadded_sequences = []
|
||
|
|
|
||
|
|
if not batch_first:
|
||
|
|
padded_sequences.transpose_(0, 1)
|
||
|
|
|
||
|
|
max_length = padded_sequences.shape[1]
|
||
|
|
idx = torch.arange(max_length, device=lengths.device)
|
||
|
|
|
||
|
|
for seq, length in zip(padded_sequences, lengths):
|
||
|
|
mask = idx < length
|
||
|
|
unpacked_seq = seq[mask]
|
||
|
|
unpadded_sequences.append(unpacked_seq)
|
||
|
|
|
||
|
|
return unpadded_sequences
|
||
|
|
|
||
|
|
|
||
|
|
def pack_sequence(sequences: List[Tensor], enforce_sorted: bool = True) -> PackedSequence:
|
||
|
|
r"""Packs a list of variable length Tensors.
|
||
|
|
|
||
|
|
Consecutive call of the next functions: ``pad_sequence``, ``pack_padded_sequence``.
|
||
|
|
|
||
|
|
``sequences`` should be a list of Tensors of size ``L x *``, where `L` is
|
||
|
|
the length of a sequence and `*` is any number of trailing dimensions,
|
||
|
|
including zero.
|
||
|
|
|
||
|
|
For unsorted sequences, use `enforce_sorted = False`. If ``enforce_sorted``
|
||
|
|
is ``True``, the sequences should be sorted in the order of decreasing length.
|
||
|
|
``enforce_sorted = True`` is only necessary for ONNX export.
|
||
|
|
|
||
|
|
|
||
|
|
Example:
|
||
|
|
>>> from torch.nn.utils.rnn import pack_sequence
|
||
|
|
>>> a = torch.tensor([1, 2, 3])
|
||
|
|
>>> b = torch.tensor([4, 5])
|
||
|
|
>>> c = torch.tensor([6])
|
||
|
|
>>> pack_sequence([a, b, c])
|
||
|
|
PackedSequence(data=tensor([1, 4, 6, 2, 5, 3]), batch_sizes=tensor([3, 2, 1]), sorted_indices=None, unsorted_indices=None)
|
||
|
|
|
||
|
|
|
||
|
|
Args:
|
||
|
|
sequences (list[Tensor]): A list of sequences of decreasing length.
|
||
|
|
enforce_sorted (bool, optional): if ``True``, checks that the input
|
||
|
|
contains sequences sorted by length in a decreasing order. If
|
||
|
|
``False``, this condition is not checked. Default: ``True``.
|
||
|
|
|
||
|
|
Returns:
|
||
|
|
a :class:`PackedSequence` object
|
||
|
|
"""
|
||
|
|
lengths = torch.as_tensor([v.size(0) for v in sequences])
|
||
|
|
return pack_padded_sequence(pad_sequence(sequences), lengths, enforce_sorted=enforce_sorted)
|
||
|
|
|
||
|
|
|
||
|
|
def unpack_sequence(packed_sequences: PackedSequence) -> List[Tensor]:
|
||
|
|
r"""Unpack PackedSequence into a list of variable length Tensors.
|
||
|
|
|
||
|
|
``packed_sequences`` should be a PackedSequence object.
|
||
|
|
|
||
|
|
|
||
|
|
Example:
|
||
|
|
>>> from torch.nn.utils.rnn import pack_sequence, unpack_sequence
|
||
|
|
>>> a = torch.tensor([1, 2, 3])
|
||
|
|
>>> b = torch.tensor([4, 5])
|
||
|
|
>>> c = torch.tensor([6])
|
||
|
|
>>> sequences = [a, b, c]
|
||
|
|
>>> print(sequences)
|
||
|
|
[tensor([1, 2, 3]), tensor([4, 5]), tensor([6])]
|
||
|
|
>>> packed_sequences = pack_sequence(sequences)
|
||
|
|
>>> print(packed_sequences)
|
||
|
|
PackedSequence(data=tensor([1, 4, 6, 2, 5, 3]), batch_sizes=tensor([3, 2, 1]), sorted_indices=None, unsorted_indices=None)
|
||
|
|
>>> unpacked_sequences = unpack_sequence(packed_sequences)
|
||
|
|
>>> print(unpacked_sequences)
|
||
|
|
[tensor([1, 2, 3]), tensor([4, 5]), tensor([6])]
|
||
|
|
|
||
|
|
|
||
|
|
Args:
|
||
|
|
packed_sequences (PackedSequence): A PackedSequence object.
|
||
|
|
|
||
|
|
Returns:
|
||
|
|
a list of :class:`Tensor` objects
|
||
|
|
"""
|
||
|
|
padded_sequences, lengths = pad_packed_sequence(packed_sequences, batch_first=True)
|
||
|
|
unpacked_sequences = unpad_sequence(padded_sequences, lengths, batch_first=True)
|
||
|
|
return unpacked_sequences
|