import numpy as np import pytest import pandas as pd import pandas._testing as tm from pandas.core.arrays.sparse import ( SparseArray, SparseDtype, ) arr_data = np.array([np.nan, np.nan, 1, 2, 3, np.nan, 4, 5, np.nan, 6]) arr = SparseArray(arr_data) class TestGetitem: def test_getitem(self): dense = arr.to_dense() for i in range(len(arr)): tm.assert_almost_equal(arr[i], dense[i]) tm.assert_almost_equal(arr[-i], dense[-i]) def test_getitem_arraylike_mask(self): arr = SparseArray([0, 1, 2]) result = arr[[True, False, True]] expected = SparseArray([0, 2]) tm.assert_sp_array_equal(result, expected) @pytest.mark.parametrize( "slc", [ np.s_[:], np.s_[1:10], np.s_[1:100], np.s_[10:1], np.s_[:-3], np.s_[-5:-4], np.s_[:-12], np.s_[-12:], np.s_[2:], np.s_[2::3], np.s_[::2], np.s_[::-1], np.s_[::-2], np.s_[1:6:2], np.s_[:-6:-2], ], ) @pytest.mark.parametrize( "as_dense", [[np.nan] * 10, [1] * 10, [np.nan] * 5 + [1] * 5, []] ) def test_getslice(self, slc, as_dense): as_dense = np.array(as_dense) arr = SparseArray(as_dense) result = arr[slc] expected = SparseArray(as_dense[slc]) tm.assert_sp_array_equal(result, expected) def test_getslice_tuple(self): dense = np.array([np.nan, 0, 3, 4, 0, 5, np.nan, np.nan, 0]) sparse = SparseArray(dense) res = sparse[(slice(4, None),)] exp = SparseArray(dense[4:]) tm.assert_sp_array_equal(res, exp) sparse = SparseArray(dense, fill_value=0) res = sparse[(slice(4, None),)] exp = SparseArray(dense[4:], fill_value=0) tm.assert_sp_array_equal(res, exp) msg = "too many indices for array" with pytest.raises(IndexError, match=msg): sparse[4:, :] with pytest.raises(IndexError, match=msg): # check numpy compat dense[4:, :] def test_boolean_slice_empty(self): arr = SparseArray([0, 1, 2]) res = arr[[False, False, False]] assert res.dtype == arr.dtype def test_getitem_bool_sparse_array(self): # GH 23122 spar_bool = SparseArray([False, True] * 5, dtype=np.bool_, fill_value=True) exp = SparseArray([np.nan, 2, np.nan, 5, 6]) tm.assert_sp_array_equal(arr[spar_bool], exp) spar_bool = ~spar_bool res = arr[spar_bool] exp = SparseArray([np.nan, 1, 3, 4, np.nan]) tm.assert_sp_array_equal(res, exp) spar_bool = SparseArray( [False, True, np.nan] * 3, dtype=np.bool_, fill_value=np.nan ) res = arr[spar_bool] exp = SparseArray([np.nan, 3, 5]) tm.assert_sp_array_equal(res, exp) def test_getitem_bool_sparse_array_as_comparison(self): # GH 45110 arr = SparseArray([1, 2, 3, 4, np.nan, np.nan], fill_value=np.nan) res = arr[arr > 2] exp = SparseArray([3.0, 4.0], fill_value=np.nan) tm.assert_sp_array_equal(res, exp) def test_get_item(self): zarr = SparseArray([0, 0, 1, 2, 3, 0, 4, 5, 0, 6], fill_value=0) assert np.isnan(arr[1]) assert arr[2] == 1 assert arr[7] == 5 assert zarr[0] == 0 assert zarr[2] == 1 assert zarr[7] == 5 errmsg = "must be an integer between -10 and 10" with pytest.raises(IndexError, match=errmsg): arr[11] with pytest.raises(IndexError, match=errmsg): arr[-11] assert arr[-1] == arr[len(arr) - 1] class TestSetitem: def test_set_item(self): arr = SparseArray(arr_data).copy() def setitem(): arr[5] = 3 def setslice(): arr[1:5] = 2 with pytest.raises(TypeError, match="assignment via setitem"): setitem() with pytest.raises(TypeError, match="assignment via setitem"): setslice() class TestTake: def test_take_scalar_raises(self): msg = "'indices' must be an array, not a scalar '2'." with pytest.raises(ValueError, match=msg): arr.take(2) def test_take(self): exp = SparseArray(np.take(arr_data, [2, 3])) tm.assert_sp_array_equal(arr.take([2, 3]), exp) exp = SparseArray(np.take(arr_data, [0, 1, 2])) tm.assert_sp_array_equal(arr.take([0, 1, 2]), exp) def test_take_all_empty(self): a = pd.array([0, 0], dtype=SparseDtype("int64")) result = a.take([0, 1], allow_fill=True, fill_value=np.nan) tm.assert_sp_array_equal(a, result) def test_take_fill_value(self): data = np.array([1, np.nan, 0, 3, 0]) sparse = SparseArray(data, fill_value=0) exp = SparseArray(np.take(data, [0]), fill_value=0) tm.assert_sp_array_equal(sparse.take([0]), exp) exp = SparseArray(np.take(data, [1, 3, 4]), fill_value=0) tm.assert_sp_array_equal(sparse.take([1, 3, 4]), exp) def test_take_negative(self): exp = SparseArray(np.take(arr_data, [-1])) tm.assert_sp_array_equal(arr.take([-1]), exp) exp = SparseArray(np.take(arr_data, [-4, -3, -2])) tm.assert_sp_array_equal(arr.take([-4, -3, -2]), exp) def test_bad_take(self): with pytest.raises(IndexError, match="bounds"): arr.take([11]) def test_take_filling(self): # similar tests as GH 12631 sparse = SparseArray([np.nan, np.nan, 1, np.nan, 4]) result = sparse.take(np.array([1, 0, -1])) expected = SparseArray([np.nan, np.nan, 4]) tm.assert_sp_array_equal(result, expected) # TODO: actionable? # XXX: test change: fill_value=True -> allow_fill=True result = sparse.take(np.array([1, 0, -1]), allow_fill=True) expected = SparseArray([np.nan, np.nan, np.nan]) tm.assert_sp_array_equal(result, expected) # allow_fill=False result = sparse.take(np.array([1, 0, -1]), allow_fill=False, fill_value=True) expected = SparseArray([np.nan, np.nan, 4]) tm.assert_sp_array_equal(result, expected) msg = "Invalid value in 'indices'" with pytest.raises(ValueError, match=msg): sparse.take(np.array([1, 0, -2]), allow_fill=True) with pytest.raises(ValueError, match=msg): sparse.take(np.array([1, 0, -5]), allow_fill=True) msg = "out of bounds value in 'indices'" with pytest.raises(IndexError, match=msg): sparse.take(np.array([1, -6])) with pytest.raises(IndexError, match=msg): sparse.take(np.array([1, 5])) with pytest.raises(IndexError, match=msg): sparse.take(np.array([1, 5]), allow_fill=True) def test_take_filling_fill_value(self): # same tests as GH#12631 sparse = SparseArray([np.nan, 0, 1, 0, 4], fill_value=0) result = sparse.take(np.array([1, 0, -1])) expected = SparseArray([0, np.nan, 4], fill_value=0) tm.assert_sp_array_equal(result, expected) # fill_value result = sparse.take(np.array([1, 0, -1]), allow_fill=True) # TODO: actionable? # XXX: behavior change. # the old way of filling self.fill_value doesn't follow EA rules. # It's supposed to be self.dtype.na_value (nan in this case) expected = SparseArray([0, np.nan, np.nan], fill_value=0) tm.assert_sp_array_equal(result, expected) # allow_fill=False result = sparse.take(np.array([1, 0, -1]), allow_fill=False, fill_value=True) expected = SparseArray([0, np.nan, 4], fill_value=0) tm.assert_sp_array_equal(result, expected) msg = "Invalid value in 'indices'." with pytest.raises(ValueError, match=msg): sparse.take(np.array([1, 0, -2]), allow_fill=True) with pytest.raises(ValueError, match=msg): sparse.take(np.array([1, 0, -5]), allow_fill=True) msg = "out of bounds value in 'indices'" with pytest.raises(IndexError, match=msg): sparse.take(np.array([1, -6])) with pytest.raises(IndexError, match=msg): sparse.take(np.array([1, 5])) with pytest.raises(IndexError, match=msg): sparse.take(np.array([1, 5]), fill_value=True) @pytest.mark.parametrize("kind", ["block", "integer"]) def test_take_filling_all_nan(self, kind): sparse = SparseArray([np.nan, np.nan, np.nan, np.nan, np.nan], kind=kind) result = sparse.take(np.array([1, 0, -1])) expected = SparseArray([np.nan, np.nan, np.nan], kind=kind) tm.assert_sp_array_equal(result, expected) result = sparse.take(np.array([1, 0, -1]), fill_value=True) expected = SparseArray([np.nan, np.nan, np.nan], kind=kind) tm.assert_sp_array_equal(result, expected) msg = "out of bounds value in 'indices'" with pytest.raises(IndexError, match=msg): sparse.take(np.array([1, -6])) with pytest.raises(IndexError, match=msg): sparse.take(np.array([1, 5])) with pytest.raises(IndexError, match=msg): sparse.take(np.array([1, 5]), fill_value=True) class TestWhere: def test_where_retain_fill_value(self): # GH#45691 don't lose fill_value on _where arr = SparseArray([np.nan, 1.0], fill_value=0) mask = np.array([True, False]) res = arr._where(~mask, 1) exp = SparseArray([1, 1.0], fill_value=0) tm.assert_sp_array_equal(res, exp) ser = pd.Series(arr) res = ser.where(~mask, 1) tm.assert_series_equal(res, pd.Series(exp))