"""Extract reference documentation from the NumPy source tree. """ # copied from numpydoc/docscrape.py import inspect import textwrap import re import pydoc from warnings import warn from collections import namedtuple from collections.abc import Callable, Mapping import copy import sys def strip_blank_lines(l): "Remove leading and trailing blank lines from a list of lines" while l and not l[0].strip(): del l[0] while l and not l[-1].strip(): del l[-1] return l class Reader: """A line-based string reader. """ def __init__(self, data): """ Parameters ---------- data : str String with lines separated by '\\n'. """ if isinstance(data, list): self._str = data else: self._str = data.split('\n') # store string as list of lines self.reset() def __getitem__(self, n): return self._str[n] def reset(self): self._l = 0 # current line nr def read(self): if not self.eof(): out = self[self._l] self._l += 1 return out else: return '' def seek_next_non_empty_line(self): for l in self[self._l:]: if l.strip(): break else: self._l += 1 def eof(self): return self._l >= len(self._str) def read_to_condition(self, condition_func): start = self._l for line in self[start:]: if condition_func(line): return self[start:self._l] self._l += 1 if self.eof(): return self[start:self._l+1] return [] def read_to_next_empty_line(self): self.seek_next_non_empty_line() def is_empty(line): return not line.strip() return self.read_to_condition(is_empty) def read_to_next_unindented_line(self): def is_unindented(line): return (line.strip() and (len(line.lstrip()) == len(line))) return self.read_to_condition(is_unindented) def peek(self, n=0): if self._l + n < len(self._str): return self[self._l + n] else: return '' def is_empty(self): return not ''.join(self._str).strip() class ParseError(Exception): def __str__(self): message = self.args[0] if hasattr(self, 'docstring'): message = f"{message} in {self.docstring!r}" return message Parameter = namedtuple('Parameter', ['name', 'type', 'desc']) class NumpyDocString(Mapping): """Parses a numpydoc string to an abstract representation Instances define a mapping from section title to structured data. """ sections = { 'Signature': '', 'Summary': [''], 'Extended Summary': [], 'Parameters': [], 'Returns': [], 'Yields': [], 'Receives': [], 'Raises': [], 'Warns': [], 'Other Parameters': [], 'Attributes': [], 'Methods': [], 'See Also': [], 'Notes': [], 'Warnings': [], 'References': '', 'Examples': '', 'index': {} } def __init__(self, docstring, config={}): orig_docstring = docstring docstring = textwrap.dedent(docstring).split('\n') self._doc = Reader(docstring) self._parsed_data = copy.deepcopy(self.sections) try: self._parse() except ParseError as e: e.docstring = orig_docstring raise def __getitem__(self, key): return self._parsed_data[key] def __setitem__(self, key, val): if key not in self._parsed_data: self._error_location("Unknown section %s" % key, error=False) else: self._parsed_data[key] = val def __iter__(self): return iter(self._parsed_data) def __len__(self): return len(self._parsed_data) def _is_at_section(self): self._doc.seek_next_non_empty_line() if self._doc.eof(): return False l1 = self._doc.peek().strip() # e.g. Parameters if l1.startswith('.. index::'): return True l2 = self._doc.peek(1).strip() # ---------- or ========== return l2.startswith('-'*len(l1)) or l2.startswith('='*len(l1)) def _strip(self, doc): i = 0 j = 0 for i, line in enumerate(doc): if line.strip(): break for j, line in enumerate(doc[::-1]): if line.strip(): break return doc[i:len(doc)-j] def _read_to_next_section(self): section = self._doc.read_to_next_empty_line() while not self._is_at_section() and not self._doc.eof(): if not self._doc.peek(-1).strip(): # previous line was empty section += [''] section += self._doc.read_to_next_empty_line() return section def _read_sections(self): while not self._doc.eof(): data = self._read_to_next_section() name = data[0].strip() if name.startswith('..'): # index section yield name, data[1:] elif len(data) < 2: yield StopIteration else: yield name, self._strip(data[2:]) def _parse_param_list(self, content, single_element_is_type=False): r = Reader(content) params = [] while not r.eof(): header = r.read().strip() if ' : ' in header: arg_name, arg_type = header.split(' : ')[:2] else: if single_element_is_type: arg_name, arg_type = '', header else: arg_name, arg_type = header, '' desc = r.read_to_next_unindented_line() desc = dedent_lines(desc) desc = strip_blank_lines(desc) params.append(Parameter(arg_name, arg_type, desc)) return params # See also supports the following formats. # # # SPACE* COLON SPACE+ SPACE* # ( COMMA SPACE+ )+ (COMMA | PERIOD)? SPACE* # ( COMMA SPACE+ )* SPACE* COLON SPACE+ SPACE* # is one of # # COLON COLON BACKTICK BACKTICK # where # is a legal function name, and # is any nonempty sequence of word characters. # Examples: func_f1 :meth:`func_h1` :obj:`~baz.obj_r` :class:`class_j` # is a string describing the function. _role = r":(?P\w+):" _funcbacktick = r"`(?P(?:~\w+\.)?[a-zA-Z0-9_\.-]+)`" _funcplain = r"(?P[a-zA-Z0-9_\.-]+)" _funcname = r"(" + _role + _funcbacktick + r"|" + _funcplain + r")" _funcnamenext = _funcname.replace('role', 'rolenext') _funcnamenext = _funcnamenext.replace('name', 'namenext') _description = r"(?P\s*:(\s+(?P\S+.*))?)?\s*$" _func_rgx = re.compile(r"^\s*" + _funcname + r"\s*") _line_rgx = re.compile( r"^\s*" + r"(?P" + # group for all function names _funcname + r"(?P([,]\s+" + _funcnamenext + r")*)" + r")" + # end of "allfuncs" # Some function lists have a trailing comma (or period) '\s*' r"(?P[,\.])?" + _description) # Empty elements are replaced with '..' empty_description = '..' def _parse_see_also(self, content): """ func_name : Descriptive text continued text another_func_name : Descriptive text func_name1, func_name2, :meth:`func_name`, func_name3 """ items = [] def parse_item_name(text): """Match ':role:`name`' or 'name'.""" m = self._func_rgx.match(text) if not m: raise ParseError("%s is not a item name" % text) role = m.group('role') name = m.group('name') if role else m.group('name2') return name, role, m.end() rest = [] for line in content: if not line.strip(): continue line_match = self._line_rgx.match(line) description = None if line_match: description = line_match.group('desc') if line_match.group('trailing') and description: self._error_location( 'Unexpected comma or period after function list at ' 'index %d of line "%s"' % (line_match.end('trailing'), line), error=False) if not description and line.startswith(' '): rest.append(line.strip()) elif line_match: funcs = [] text = line_match.group('allfuncs') while True: if not text.strip(): break name, role, match_end = parse_item_name(text) funcs.append((name, role)) text = text[match_end:].strip() if text and text[0] == ',': text = text[1:].strip() rest = list(filter(None, [description])) items.append((funcs, rest)) else: raise ParseError("%s is not a item name" % line) return items def _parse_index(self, section, content): """ .. index:: default :refguide: something, else, and more """ def strip_each_in(lst): return [s.strip() for s in lst] out = {} section = section.split('::') if len(section) > 1: out['default'] = strip_each_in(section[1].split(','))[0] for line in content: line = line.split(':') if len(line) > 2: out[line[1]] = strip_each_in(line[2].split(',')) return out def _parse_summary(self): """Grab signature (if given) and summary""" if self._is_at_section(): return # If several signatures present, take the last one while True: summary = self._doc.read_to_next_empty_line() summary_str = " ".join([s.strip() for s in summary]).strip() compiled = re.compile(r'^([\w., ]+=)?\s*[\w\.]+\(.*\)$') if compiled.match(summary_str): self['Signature'] = summary_str if not self._is_at_section(): continue break if summary is not None: self['Summary'] = summary if not self._is_at_section(): self['Extended Summary'] = self._read_to_next_section() def _parse(self): self._doc.reset() self._parse_summary() sections = list(self._read_sections()) section_names = {section for section, content in sections} has_returns = 'Returns' in section_names has_yields = 'Yields' in section_names # We could do more tests, but we are not. Arbitrarily. if has_returns and has_yields: msg = 'Docstring contains both a Returns and Yields section.' raise ValueError(msg) if not has_yields and 'Receives' in section_names: msg = 'Docstring contains a Receives section but not Yields.' raise ValueError(msg) for (section, content) in sections: if not section.startswith('..'): section = (s.capitalize() for s in section.split(' ')) section = ' '.join(section) if self.get(section): self._error_location("The section %s appears twice" % section) if section in ('Parameters', 'Other Parameters', 'Attributes', 'Methods'): self[section] = self._parse_param_list(content) elif section in ('Returns', 'Yields', 'Raises', 'Warns', 'Receives'): self[section] = self._parse_param_list( content, single_element_is_type=True) elif section.startswith('.. index::'): self['index'] = self._parse_index(section, content) elif section == 'See Also': self['See Also'] = self._parse_see_also(content) else: self[section] = content def _error_location(self, msg, error=True): if hasattr(self, '_obj'): # we know where the docs came from: try: filename = inspect.getsourcefile(self._obj) except TypeError: filename = None msg = msg + (f" in the docstring of {self._obj} in {filename}.") if error: raise ValueError(msg) else: warn(msg, stacklevel=3) # string conversion routines def _str_header(self, name, symbol='-'): return [name, len(name)*symbol] def _str_indent(self, doc, indent=4): out = [] for line in doc: out += [' '*indent + line] return out def _str_signature(self): if self['Signature']: return [self['Signature'].replace('*', r'\*')] + [''] else: return [''] def _str_summary(self): if self['Summary']: return self['Summary'] + [''] else: return [] def _str_extended_summary(self): if self['Extended Summary']: return self['Extended Summary'] + [''] else: return [] def _str_param_list(self, name): out = [] if self[name]: out += self._str_header(name) for param in self[name]: parts = [] if param.name: parts.append(param.name) if param.type: parts.append(param.type) out += [' : '.join(parts)] if param.desc and ''.join(param.desc).strip(): out += self._str_indent(param.desc) out += [''] return out def _str_section(self, name): out = [] if self[name]: out += self._str_header(name) out += self[name] out += [''] return out def _str_see_also(self, func_role): if not self['See Also']: return [] out = [] out += self._str_header("See Also") out += [''] last_had_desc = True for funcs, desc in self['See Also']: assert isinstance(funcs, list) links = [] for func, role in funcs: if role: link = f':{role}:`{func}`' elif func_role: link = f':{func_role}:`{func}`' else: link = "`%s`_" % func links.append(link) link = ', '.join(links) out += [link] if desc: out += self._str_indent([' '.join(desc)]) last_had_desc = True else: last_had_desc = False out += self._str_indent([self.empty_description]) if last_had_desc: out += [''] out += [''] return out def _str_index(self): idx = self['index'] out = [] output_index = False default_index = idx.get('default', '') if default_index: output_index = True out += ['.. index:: %s' % default_index] for section, references in idx.items(): if section == 'default': continue output_index = True out += [' :{}: {}'.format(section, ', '.join(references))] if output_index: return out else: return '' def __str__(self, func_role=''): out = [] out += self._str_signature() out += self._str_summary() out += self._str_extended_summary() for param_list in ('Parameters', 'Returns', 'Yields', 'Receives', 'Other Parameters', 'Raises', 'Warns'): out += self._str_param_list(param_list) out += self._str_section('Warnings') out += self._str_see_also(func_role) for s in ('Notes', 'References', 'Examples'): out += self._str_section(s) for param_list in ('Attributes', 'Methods'): out += self._str_param_list(param_list) out += self._str_index() return '\n'.join(out) def indent(str, indent=4): indent_str = ' '*indent if str is None: return indent_str lines = str.split('\n') return '\n'.join(indent_str + l for l in lines) def dedent_lines(lines): """Deindent a list of lines maximally""" return textwrap.dedent("\n".join(lines)).split("\n") def header(text, style='-'): return text + '\n' + style*len(text) + '\n' class FunctionDoc(NumpyDocString): def __init__(self, func, role='func', doc=None, config={}): self._f = func self._role = role # e.g. "func" or "meth" if doc is None: if func is None: raise ValueError("No function or docstring given") doc = inspect.getdoc(func) or '' NumpyDocString.__init__(self, doc, config) def get_func(self): func_name = getattr(self._f, '__name__', self.__class__.__name__) if inspect.isclass(self._f): func = getattr(self._f, '__call__', self._f.__init__) else: func = self._f return func, func_name def __str__(self): out = '' func, func_name = self.get_func() roles = {'func': 'function', 'meth': 'method'} if self._role: if self._role not in roles: print("Warning: invalid role %s" % self._role) out += '.. {}:: {}\n \n\n'.format(roles.get(self._role, ''), func_name) out += super().__str__(func_role=self._role) return out class ClassDoc(NumpyDocString): extra_public_methods = ['__call__'] def __init__(self, cls, doc=None, modulename='', func_doc=FunctionDoc, config={}): if not inspect.isclass(cls) and cls is not None: raise ValueError("Expected a class or None, but got %r" % cls) self._cls = cls if 'sphinx' in sys.modules: from sphinx.ext.autodoc import ALL else: ALL = object() self.show_inherited_members = config.get( 'show_inherited_class_members', True) if modulename and not modulename.endswith('.'): modulename += '.' self._mod = modulename if doc is None: if cls is None: raise ValueError("No class or documentation string given") doc = pydoc.getdoc(cls) NumpyDocString.__init__(self, doc) _members = config.get('members', []) if _members is ALL: _members = None _exclude = config.get('exclude-members', []) if config.get('show_class_members', True) and _exclude is not ALL: def splitlines_x(s): if not s: return [] else: return s.splitlines() for field, items in [('Methods', self.methods), ('Attributes', self.properties)]: if not self[field]: doc_list = [] for name in sorted(items): if (name in _exclude or (_members and name not in _members)): continue try: doc_item = pydoc.getdoc(getattr(self._cls, name)) doc_list.append( Parameter(name, '', splitlines_x(doc_item))) except AttributeError: pass # method doesn't exist self[field] = doc_list @property def methods(self): if self._cls is None: return [] return [name for name, func in inspect.getmembers(self._cls) if ((not name.startswith('_') or name in self.extra_public_methods) and isinstance(func, Callable) and self._is_show_member(name))] @property def properties(self): if self._cls is None: return [] return [name for name, func in inspect.getmembers(self._cls) if (not name.startswith('_') and (func is None or isinstance(func, property) or inspect.isdatadescriptor(func)) and self._is_show_member(name))] def _is_show_member(self, name): if self.show_inherited_members: return True # show all class members if name not in self._cls.__dict__: return False # class member is inherited, we do not show it return True