""" Testing for export functions of decision trees (sklearn.tree.export). """ from io import StringIO from re import finditer, search from textwrap import dedent import numpy as np import pytest from numpy.random import RandomState from sklearn.base import is_classifier from sklearn.ensemble import GradientBoostingClassifier from sklearn.exceptions import NotFittedError from sklearn.tree import ( DecisionTreeClassifier, DecisionTreeRegressor, export_graphviz, export_text, plot_tree, ) # toy sample X = [[-2, -1], [-1, -1], [-1, -2], [1, 1], [1, 2], [2, 1]] y = [-1, -1, -1, 1, 1, 1] y2 = [[-1, 1], [-1, 1], [-1, 1], [1, 2], [1, 2], [1, 3]] w = [1, 1, 1, 0.5, 0.5, 0.5] y_degraded = [1, 1, 1, 1, 1, 1] def test_graphviz_toy(): # Check correctness of export_graphviz clf = DecisionTreeClassifier( max_depth=3, min_samples_split=2, criterion="gini", random_state=2 ) clf.fit(X, y) # Test export code contents1 = export_graphviz(clf, out_file=None) contents2 = ( "digraph Tree {\n" 'node [shape=box, fontname="helvetica"] ;\n' 'edge [fontname="helvetica"] ;\n' '0 [label="x[0] <= 0.0\\ngini = 0.5\\nsamples = 6\\n' 'value = [3, 3]"] ;\n' '1 [label="gini = 0.0\\nsamples = 3\\nvalue = [3, 0]"] ;\n' "0 -> 1 [labeldistance=2.5, labelangle=45, " 'headlabel="True"] ;\n' '2 [label="gini = 0.0\\nsamples = 3\\nvalue = [0, 3]"] ;\n' "0 -> 2 [labeldistance=2.5, labelangle=-45, " 'headlabel="False"] ;\n' "}" ) assert contents1 == contents2 # Test plot_options contents1 = export_graphviz( clf, filled=True, impurity=False, proportion=True, special_characters=True, rounded=True, out_file=None, fontname="sans", ) contents2 = ( "digraph Tree {\n" 'node [shape=box, style="filled, rounded", color="black", ' 'fontname="sans"] ;\n' 'edge [fontname="sans"] ;\n' "0 [label=0 ≤ 0.0
samples = 100.0%
" 'value = [0.5, 0.5]>, fillcolor="#ffffff"] ;\n' "1 [label=value = [1.0, 0.0]>, " 'fillcolor="#e58139"] ;\n' "0 -> 1 [labeldistance=2.5, labelangle=45, " 'headlabel="True"] ;\n' "2 [label=value = [0.0, 1.0]>, " 'fillcolor="#399de5"] ;\n' "0 -> 2 [labeldistance=2.5, labelangle=-45, " 'headlabel="False"] ;\n' "}" ) assert contents1 == contents2 # Test max_depth contents1 = export_graphviz(clf, max_depth=0, class_names=True, out_file=None) contents2 = ( "digraph Tree {\n" 'node [shape=box, fontname="helvetica"] ;\n' 'edge [fontname="helvetica"] ;\n' '0 [label="x[0] <= 0.0\\ngini = 0.5\\nsamples = 6\\n' 'value = [3, 3]\\nclass = y[0]"] ;\n' '1 [label="(...)"] ;\n' "0 -> 1 ;\n" '2 [label="(...)"] ;\n' "0 -> 2 ;\n" "}" ) assert contents1 == contents2 # Test max_depth with plot_options contents1 = export_graphviz( clf, max_depth=0, filled=True, out_file=None, node_ids=True ) contents2 = ( "digraph Tree {\n" 'node [shape=box, style="filled", color="black", ' 'fontname="helvetica"] ;\n' 'edge [fontname="helvetica"] ;\n' '0 [label="node #0\\nx[0] <= 0.0\\ngini = 0.5\\n' 'samples = 6\\nvalue = [3, 3]", fillcolor="#ffffff"] ;\n' '1 [label="(...)", fillcolor="#C0C0C0"] ;\n' "0 -> 1 ;\n" '2 [label="(...)", fillcolor="#C0C0C0"] ;\n' "0 -> 2 ;\n" "}" ) assert contents1 == contents2 # Test multi-output with weighted samples clf = DecisionTreeClassifier( max_depth=2, min_samples_split=2, criterion="gini", random_state=2 ) clf = clf.fit(X, y2, sample_weight=w) contents1 = export_graphviz(clf, filled=True, impurity=False, out_file=None) contents2 = ( "digraph Tree {\n" 'node [shape=box, style="filled", color="black", ' 'fontname="helvetica"] ;\n' 'edge [fontname="helvetica"] ;\n' '0 [label="x[0] <= 0.0\\nsamples = 6\\n' "value = [[3.0, 1.5, 0.0]\\n" '[3.0, 1.0, 0.5]]", fillcolor="#ffffff"] ;\n' '1 [label="samples = 3\\nvalue = [[3, 0, 0]\\n' '[3, 0, 0]]", fillcolor="#e58139"] ;\n' "0 -> 1 [labeldistance=2.5, labelangle=45, " 'headlabel="True"] ;\n' '2 [label="x[0] <= 1.5\\nsamples = 3\\n' "value = [[0.0, 1.5, 0.0]\\n" '[0.0, 1.0, 0.5]]", fillcolor="#f1bd97"] ;\n' "0 -> 2 [labeldistance=2.5, labelangle=-45, " 'headlabel="False"] ;\n' '3 [label="samples = 2\\nvalue = [[0, 1, 0]\\n' '[0, 1, 0]]", fillcolor="#e58139"] ;\n' "2 -> 3 ;\n" '4 [label="samples = 1\\nvalue = [[0.0, 0.5, 0.0]\\n' '[0.0, 0.0, 0.5]]", fillcolor="#e58139"] ;\n' "2 -> 4 ;\n" "}" ) assert contents1 == contents2 # Test regression output with plot_options clf = DecisionTreeRegressor( max_depth=3, min_samples_split=2, criterion="squared_error", random_state=2 ) clf.fit(X, y) contents1 = export_graphviz( clf, filled=True, leaves_parallel=True, out_file=None, rotate=True, rounded=True, fontname="sans", ) contents2 = ( "digraph Tree {\n" 'node [shape=box, style="filled, rounded", color="black", ' 'fontname="sans"] ;\n' "graph [ranksep=equally, splines=polyline] ;\n" 'edge [fontname="sans"] ;\n' "rankdir=LR ;\n" '0 [label="x[0] <= 0.0\\nsquared_error = 1.0\\nsamples = 6\\n' 'value = 0.0", fillcolor="#f2c09c"] ;\n' '1 [label="squared_error = 0.0\\nsamples = 3\\' 'nvalue = -1.0", ' 'fillcolor="#ffffff"] ;\n' "0 -> 1 [labeldistance=2.5, labelangle=-45, " 'headlabel="True"] ;\n' '2 [label="squared_error = 0.0\\nsamples = 3\\nvalue = 1.0", ' 'fillcolor="#e58139"] ;\n' "0 -> 2 [labeldistance=2.5, labelangle=45, " 'headlabel="False"] ;\n' "{rank=same ; 0} ;\n" "{rank=same ; 1; 2} ;\n" "}" ) assert contents1 == contents2 # Test classifier with degraded learning set clf = DecisionTreeClassifier(max_depth=3) clf.fit(X, y_degraded) contents1 = export_graphviz(clf, filled=True, out_file=None) contents2 = ( "digraph Tree {\n" 'node [shape=box, style="filled", color="black", ' 'fontname="helvetica"] ;\n' 'edge [fontname="helvetica"] ;\n' '0 [label="gini = 0.0\\nsamples = 6\\nvalue = 6.0", ' 'fillcolor="#ffffff"] ;\n' "}" ) @pytest.mark.parametrize("constructor", [list, np.array]) def test_graphviz_feature_class_names_array_support(constructor): # Check that export_graphviz treats feature names # and class names correctly and supports arrays clf = DecisionTreeClassifier( max_depth=3, min_samples_split=2, criterion="gini", random_state=2 ) clf.fit(X, y) # Test with feature_names contents1 = export_graphviz( clf, feature_names=constructor(["feature0", "feature1"]), out_file=None ) contents2 = ( "digraph Tree {\n" 'node [shape=box, fontname="helvetica"] ;\n' 'edge [fontname="helvetica"] ;\n' '0 [label="feature0 <= 0.0\\ngini = 0.5\\nsamples = 6\\n' 'value = [3, 3]"] ;\n' '1 [label="gini = 0.0\\nsamples = 3\\nvalue = [3, 0]"] ;\n' "0 -> 1 [labeldistance=2.5, labelangle=45, " 'headlabel="True"] ;\n' '2 [label="gini = 0.0\\nsamples = 3\\nvalue = [0, 3]"] ;\n' "0 -> 2 [labeldistance=2.5, labelangle=-45, " 'headlabel="False"] ;\n' "}" ) assert contents1 == contents2 # Test with class_names contents1 = export_graphviz( clf, class_names=constructor(["yes", "no"]), out_file=None ) contents2 = ( "digraph Tree {\n" 'node [shape=box, fontname="helvetica"] ;\n' 'edge [fontname="helvetica"] ;\n' '0 [label="x[0] <= 0.0\\ngini = 0.5\\nsamples = 6\\n' 'value = [3, 3]\\nclass = yes"] ;\n' '1 [label="gini = 0.0\\nsamples = 3\\nvalue = [3, 0]\\n' 'class = yes"] ;\n' "0 -> 1 [labeldistance=2.5, labelangle=45, " 'headlabel="True"] ;\n' '2 [label="gini = 0.0\\nsamples = 3\\nvalue = [0, 3]\\n' 'class = no"] ;\n' "0 -> 2 [labeldistance=2.5, labelangle=-45, " 'headlabel="False"] ;\n' "}" ) assert contents1 == contents2 def test_graphviz_errors(): # Check for errors of export_graphviz clf = DecisionTreeClassifier(max_depth=3, min_samples_split=2) # Check not-fitted decision tree error out = StringIO() with pytest.raises(NotFittedError): export_graphviz(clf, out) clf.fit(X, y) # Check if it errors when length of feature_names # mismatches with number of features message = "Length of feature_names, 1 does not match number of features, 2" with pytest.raises(ValueError, match=message): export_graphviz(clf, None, feature_names=["a"]) message = "Length of feature_names, 3 does not match number of features, 2" with pytest.raises(ValueError, match=message): export_graphviz(clf, None, feature_names=["a", "b", "c"]) # Check error when argument is not an estimator message = "is not an estimator instance" with pytest.raises(TypeError, match=message): export_graphviz(clf.fit(X, y).tree_) # Check class_names error out = StringIO() with pytest.raises(IndexError): export_graphviz(clf, out, class_names=[]) def test_friedman_mse_in_graphviz(): clf = DecisionTreeRegressor(criterion="friedman_mse", random_state=0) clf.fit(X, y) dot_data = StringIO() export_graphviz(clf, out_file=dot_data) clf = GradientBoostingClassifier(n_estimators=2, random_state=0) clf.fit(X, y) for estimator in clf.estimators_: export_graphviz(estimator[0], out_file=dot_data) for finding in finditer(r"\[.*?samples.*?\]", dot_data.getvalue()): assert "friedman_mse" in finding.group() def test_precision(): rng_reg = RandomState(2) rng_clf = RandomState(8) for X, y, clf in zip( (rng_reg.random_sample((5, 2)), rng_clf.random_sample((1000, 4))), (rng_reg.random_sample((5,)), rng_clf.randint(2, size=(1000,))), ( DecisionTreeRegressor( criterion="friedman_mse", random_state=0, max_depth=1 ), DecisionTreeClassifier(max_depth=1, random_state=0), ), ): clf.fit(X, y) for precision in (4, 3): dot_data = export_graphviz( clf, out_file=None, precision=precision, proportion=True ) # With the current random state, the impurity and the threshold # will have the number of precision set in the export_graphviz # function. We will check the number of precision with a strict # equality. The value reported will have only 2 precision and # therefore, only a less equal comparison will be done. # check value for finding in finditer(r"value = \d+\.\d+", dot_data): assert len(search(r"\.\d+", finding.group()).group()) <= precision + 1 # check impurity if is_classifier(clf): pattern = r"gini = \d+\.\d+" else: pattern = r"friedman_mse = \d+\.\d+" # check impurity for finding in finditer(pattern, dot_data): assert len(search(r"\.\d+", finding.group()).group()) == precision + 1 # check threshold for finding in finditer(r"<= \d+\.\d+", dot_data): assert len(search(r"\.\d+", finding.group()).group()) == precision + 1 def test_export_text_errors(): clf = DecisionTreeClassifier(max_depth=2, random_state=0) clf.fit(X, y) err_msg = "feature_names must contain 2 elements, got 1" with pytest.raises(ValueError, match=err_msg): export_text(clf, feature_names=["a"]) err_msg = ( "When `class_names` is an array, it should contain as" " many items as `decision_tree.classes_`. Got 1 while" " the tree was fitted with 2 classes." ) with pytest.raises(ValueError, match=err_msg): export_text(clf, class_names=["a"]) def test_export_text(): clf = DecisionTreeClassifier(max_depth=2, random_state=0) clf.fit(X, y) expected_report = dedent(""" |--- feature_1 <= 0.00 | |--- class: -1 |--- feature_1 > 0.00 | |--- class: 1 """).lstrip() assert export_text(clf) == expected_report # testing that leaves at level 1 are not truncated assert export_text(clf, max_depth=0) == expected_report # testing that the rest of the tree is truncated assert export_text(clf, max_depth=10) == expected_report expected_report = dedent(""" |--- feature_1 <= 0.00 | |--- weights: [3.00, 0.00] class: -1 |--- feature_1 > 0.00 | |--- weights: [0.00, 3.00] class: 1 """).lstrip() assert export_text(clf, show_weights=True) == expected_report expected_report = dedent(""" |- feature_1 <= 0.00 | |- class: -1 |- feature_1 > 0.00 | |- class: 1 """).lstrip() assert export_text(clf, spacing=1) == expected_report X_l = [[-2, -1], [-1, -1], [-1, -2], [1, 1], [1, 2], [2, 1], [-1, 1]] y_l = [-1, -1, -1, 1, 1, 1, 2] clf = DecisionTreeClassifier(max_depth=4, random_state=0) clf.fit(X_l, y_l) expected_report = dedent(""" |--- feature_1 <= 0.00 | |--- class: -1 |--- feature_1 > 0.00 | |--- truncated branch of depth 2 """).lstrip() assert export_text(clf, max_depth=0) == expected_report X_mo = [[-2, -1], [-1, -1], [-1, -2], [1, 1], [1, 2], [2, 1]] y_mo = [[-1, -1], [-1, -1], [-1, -1], [1, 1], [1, 1], [1, 1]] reg = DecisionTreeRegressor(max_depth=2, random_state=0) reg.fit(X_mo, y_mo) expected_report = dedent(""" |--- feature_1 <= 0.0 | |--- value: [-1.0, -1.0] |--- feature_1 > 0.0 | |--- value: [1.0, 1.0] """).lstrip() assert export_text(reg, decimals=1) == expected_report assert export_text(reg, decimals=1, show_weights=True) == expected_report X_single = [[-2], [-1], [-1], [1], [1], [2]] reg = DecisionTreeRegressor(max_depth=2, random_state=0) reg.fit(X_single, y_mo) expected_report = dedent(""" |--- first <= 0.0 | |--- value: [-1.0, -1.0] |--- first > 0.0 | |--- value: [1.0, 1.0] """).lstrip() assert export_text(reg, decimals=1, feature_names=["first"]) == expected_report assert ( export_text(reg, decimals=1, show_weights=True, feature_names=["first"]) == expected_report ) @pytest.mark.parametrize("constructor", [list, np.array]) def test_export_text_feature_class_names_array_support(constructor): # Check that export_graphviz treats feature names # and class names correctly and supports arrays clf = DecisionTreeClassifier(max_depth=2, random_state=0) clf.fit(X, y) expected_report = dedent(""" |--- b <= 0.00 | |--- class: -1 |--- b > 0.00 | |--- class: 1 """).lstrip() assert export_text(clf, feature_names=constructor(["a", "b"])) == expected_report expected_report = dedent(""" |--- feature_1 <= 0.00 | |--- class: cat |--- feature_1 > 0.00 | |--- class: dog """).lstrip() assert export_text(clf, class_names=constructor(["cat", "dog"])) == expected_report def test_plot_tree_entropy(pyplot): # mostly smoke tests # Check correctness of export_graphviz for criterion = entropy clf = DecisionTreeClassifier( max_depth=3, min_samples_split=2, criterion="entropy", random_state=2 ) clf.fit(X, y) # Test export code feature_names = ["first feat", "sepal_width"] nodes = plot_tree(clf, feature_names=feature_names) assert len(nodes) == 3 assert ( nodes[0].get_text() == "first feat <= 0.0\nentropy = 1.0\nsamples = 6\nvalue = [3, 3]" ) assert nodes[1].get_text() == "entropy = 0.0\nsamples = 3\nvalue = [3, 0]" assert nodes[2].get_text() == "entropy = 0.0\nsamples = 3\nvalue = [0, 3]" def test_plot_tree_gini(pyplot): # mostly smoke tests # Check correctness of export_graphviz for criterion = gini clf = DecisionTreeClassifier( max_depth=3, min_samples_split=2, criterion="gini", random_state=2 ) clf.fit(X, y) # Test export code feature_names = ["first feat", "sepal_width"] nodes = plot_tree(clf, feature_names=feature_names) assert len(nodes) == 3 assert ( nodes[0].get_text() == "first feat <= 0.0\ngini = 0.5\nsamples = 6\nvalue = [3, 3]" ) assert nodes[1].get_text() == "gini = 0.0\nsamples = 3\nvalue = [3, 0]" assert nodes[2].get_text() == "gini = 0.0\nsamples = 3\nvalue = [0, 3]" def test_not_fitted_tree(pyplot): # Testing if not fitted tree throws the correct error clf = DecisionTreeRegressor() with pytest.raises(NotFittedError): plot_tree(clf)