saad
/
ai-content-maker
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity
ai-content-maker/.venv/Lib/site-packages/sympy/utilities/lambdify.py

1527 lines
54 KiB
Python
Raw Blame History

"""
This module provides convenient functions to transform SymPy expressions to
lambda functions which can be used to calculate numerical values very fast.
"""
from __future__ import annotations
from typing import Any
import builtins
import inspect
import keyword
import textwrap
import linecache
# Required despite static analysis claiming it is not used
from sympy.external import import_module # noqa:F401
from sympy.utilities.exceptions import sympy_deprecation_warning
from sympy.utilities.decorator import doctest_depends_on
from sympy.utilities.iterables import (is_sequence, iterable,
NotIterable, flatten)
from sympy.utilities.misc import filldedent
__doctest_requires__ = {('lambdify',): ['numpy', 'tensorflow']}
# Default namespaces, letting us define translations that can't be defined
# by simple variable maps, like I => 1j
MATH_DEFAULT: dict[str, Any] = {}
MPMATH_DEFAULT: dict[str, Any] = {}
NUMPY_DEFAULT: dict[str, Any] = {"I": 1j}
SCIPY_DEFAULT: dict[str, Any] = {"I": 1j}
CUPY_DEFAULT: dict[str, Any] = {"I": 1j}
JAX_DEFAULT: dict[str, Any] = {"I": 1j}
TENSORFLOW_DEFAULT: dict[str, Any] = {}
SYMPY_DEFAULT: dict[str, Any] = {}
NUMEXPR_DEFAULT: dict[str, Any] = {}
# These are the namespaces the lambda functions will use.
# These are separate from the names above because they are modified
# throughout this file, whereas the defaults should remain unmodified.
MATH = MATH_DEFAULT.copy()
MPMATH = MPMATH_DEFAULT.copy()
NUMPY = NUMPY_DEFAULT.copy()
SCIPY = SCIPY_DEFAULT.copy()
CUPY = CUPY_DEFAULT.copy()
JAX = JAX_DEFAULT.copy()
TENSORFLOW = TENSORFLOW_DEFAULT.copy()
SYMPY = SYMPY_DEFAULT.copy()
NUMEXPR = NUMEXPR_DEFAULT.copy()
# Mappings between SymPy and other modules function names.
MATH_TRANSLATIONS = {
"ceiling": "ceil",
"E": "e",
"ln": "log",
}
# NOTE: This dictionary is reused in Function._eval_evalf to allow subclasses
# of Function to automatically evalf.
MPMATH_TRANSLATIONS = {
"Abs": "fabs",
"elliptic_k": "ellipk",
"elliptic_f": "ellipf",
"elliptic_e": "ellipe",
"elliptic_pi": "ellippi",
"ceiling": "ceil",
"chebyshevt": "chebyt",
"chebyshevu": "chebyu",
"E": "e",
"I": "j",
"ln": "log",
#"lowergamma":"lower_gamma",
"oo": "inf",
#"uppergamma":"upper_gamma",
"LambertW": "lambertw",
"MutableDenseMatrix": "matrix",
"ImmutableDenseMatrix": "matrix",
"conjugate": "conj",
"dirichlet_eta": "altzeta",
"Ei": "ei",
"Shi": "shi",
"Chi": "chi",
"Si": "si",
"Ci": "ci",
"RisingFactorial": "rf",
"FallingFactorial": "ff",
"betainc_regularized": "betainc",
}
NUMPY_TRANSLATIONS: dict[str, str] = {
"Heaviside": "heaviside",
}
SCIPY_TRANSLATIONS: dict[str, str] = {}
CUPY_TRANSLATIONS: dict[str, str] = {}
JAX_TRANSLATIONS: dict[str, str] = {}
TENSORFLOW_TRANSLATIONS: dict[str, str] = {}
NUMEXPR_TRANSLATIONS: dict[str, str] = {}
# Available modules:
MODULES = {
"math": (MATH, MATH_DEFAULT, MATH_TRANSLATIONS, ("from math import *",)),
"mpmath": (MPMATH, MPMATH_DEFAULT, MPMATH_TRANSLATIONS, ("from mpmath import *",)),
"numpy": (NUMPY, NUMPY_DEFAULT, NUMPY_TRANSLATIONS, ("import numpy; from numpy import *; from numpy.linalg import *",)),
"scipy": (SCIPY, SCIPY_DEFAULT, SCIPY_TRANSLATIONS, ("import scipy; import numpy; from scipy.special import *",)),
"cupy": (CUPY, CUPY_DEFAULT, CUPY_TRANSLATIONS, ("import cupy",)),
"jax": (JAX, JAX_DEFAULT, JAX_TRANSLATIONS, ("import jax",)),
"tensorflow": (TENSORFLOW, TENSORFLOW_DEFAULT, TENSORFLOW_TRANSLATIONS, ("import tensorflow",)),
"sympy": (SYMPY, SYMPY_DEFAULT, {}, (
"from sympy.functions import *",
"from sympy.matrices import *",
"from sympy import Integral, pi, oo, nan, zoo, E, I",)),
"numexpr" : (NUMEXPR, NUMEXPR_DEFAULT, NUMEXPR_TRANSLATIONS,
("import_module('numexpr')", )),
}
def _import(module, reload=False):
"""
Creates a global translation dictionary for module.
The argument module has to be one of the following strings: "math",
"mpmath", "numpy", "sympy", "tensorflow", "jax".
These dictionaries map names of Python functions to their equivalent in
other modules.
"""
try:
namespace, namespace_default, translations, import_commands = MODULES[
module]
except KeyError:
raise NameError(
"'%s' module cannot be used for lambdification" % module)
# Clear namespace or exit
if namespace != namespace_default:
# The namespace was already generated, don't do it again if not forced.
if reload:
namespace.clear()
namespace.update(namespace_default)
else:
return
for import_command in import_commands:
if import_command.startswith('import_module'):
module = eval(import_command)
if module is not None:
namespace.update(module.__dict__)
continue
else:
try:
exec(import_command, {}, namespace)
continue
except ImportError:
pass
raise ImportError(
"Cannot import '%s' with '%s' command" % (module, import_command))
# Add translated names to namespace
for sympyname, translation in translations.items():
namespace[sympyname] = namespace[translation]
# For computing the modulus of a SymPy expression we use the builtin abs
# function, instead of the previously used fabs function for all
# translation modules. This is because the fabs function in the math
# module does not accept complex valued arguments. (see issue 9474). The
# only exception, where we don't use the builtin abs function is the
# mpmath translation module, because mpmath.fabs returns mpf objects in
# contrast to abs().
if 'Abs' not in namespace:
namespace['Abs'] = abs
# Used for dynamically generated filenames that are inserted into the
# linecache.
_lambdify_generated_counter = 1
@doctest_depends_on(modules=('numpy', 'scipy', 'tensorflow',), python_version=(3,))
def lambdify(args, expr, modules=None, printer=None, use_imps=True,
dummify=False, cse=False, docstring_limit=1000):
"""Convert a SymPy expression into a function that allows for fast
numeric evaluation.
.. warning::
This function uses ``exec``, and thus should not be used on
unsanitized input.
.. deprecated:: 1.7
Passing a set for the *args* parameter is deprecated as sets are
unordered. Use an ordered iterable such as a list or tuple.
Explanation
===========
For example, to convert the SymPy expression ``sin(x) + cos(x)`` to an
equivalent NumPy function that numerically evaluates it:
>>> from sympy import sin, cos, symbols, lambdify
>>> import numpy as np
>>> x = symbols('x')
>>> expr = sin(x) + cos(x)
>>> expr
sin(x) + cos(x)
>>> f = lambdify(x, expr, 'numpy')
>>> a = np.array([1, 2])
>>> f(a)
[1.38177329 0.49315059]
The primary purpose of this function is to provide a bridge from SymPy
expressions to numerical libraries such as NumPy, SciPy, NumExpr, mpmath,
and tensorflow. In general, SymPy functions do not work with objects from
other libraries, such as NumPy arrays, and functions from numeric
libraries like NumPy or mpmath do not work on SymPy expressions.
``lambdify`` bridges the two by converting a SymPy expression to an
equivalent numeric function.
The basic workflow with ``lambdify`` is to first create a SymPy expression
representing whatever mathematical function you wish to evaluate. This
should be done using only SymPy functions and expressions. Then, use
``lambdify`` to convert this to an equivalent function for numerical
evaluation. For instance, above we created ``expr`` using the SymPy symbol
``x`` and SymPy functions ``sin`` and ``cos``, then converted it to an
equivalent NumPy function ``f``, and called it on a NumPy array ``a``.
Parameters
==========
args : List[Symbol]
A variable or a list of variables whose nesting represents the
nesting of the arguments that will be passed to the function.
Variables can be symbols, undefined functions, or matrix symbols.
>>> from sympy import Eq
>>> from sympy.abc import x, y, z
The list of variables should match the structure of how the
arguments will be passed to the function. Simply enclose the
parameters as they will be passed in a list.
To call a function like ``f(x)`` then ``[x]``
should be the first argument to ``lambdify``; for this
case a single ``x`` can also be used:
>>> f = lambdify(x, x + 1)
>>> f(1)
2
>>> f = lambdify([x], x + 1)
>>> f(1)
2
To call a function like ``f(x, y)`` then ``[x, y]`` will
be the first argument of the ``lambdify``:
>>> f = lambdify([x, y], x + y)
>>> f(1, 1)
2
To call a function with a single 3-element tuple like
``f((x, y, z))`` then ``[(x, y, z)]`` will be the first
argument of the ``lambdify``:
>>> f = lambdify([(x, y, z)], Eq(z**2, x**2 + y**2))
>>> f((3, 4, 5))
True
If two args will be passed and the first is a scalar but
the second is a tuple with two arguments then the items
in the list should match that structure:
>>> f = lambdify([x, (y, z)], x + y + z)
>>> f(1, (2, 3))
6
expr : Expr
An expression, list of expressions, or matrix to be evaluated.
Lists may be nested.
If the expression is a list, the output will also be a list.
>>> f = lambdify(x, [x, [x + 1, x + 2]])
>>> f(1)
[1, [2, 3]]
If it is a matrix, an array will be returned (for the NumPy module).
>>> from sympy import Matrix
>>> f = lambdify(x, Matrix([x, x + 1]))
>>> f(1)
[[1]
[2]]
Note that the argument order here (variables then expression) is used
to emulate the Python ``lambda`` keyword. ``lambdify(x, expr)`` works
(roughly) like ``lambda x: expr``
(see :ref:`lambdify-how-it-works` below).
modules : str, optional
Specifies the numeric library to use.
If not specified, *modules* defaults to:
- ``["scipy", "numpy"]`` if SciPy is installed
- ``["numpy"]`` if only NumPy is installed
- ``["math", "mpmath", "sympy"]`` if neither is installed.
That is, SymPy functions are replaced as far as possible by
either ``scipy`` or ``numpy`` functions if available, and Python's
standard library ``math``, or ``mpmath`` functions otherwise.
*modules* can be one of the following types:
- The strings ``"math"``, ``"mpmath"``, ``"numpy"``, ``"numexpr"``,
``"scipy"``, ``"sympy"``, or ``"tensorflow"`` or ``"jax"``. This uses the
corresponding printer and namespace mapping for that module.
- A module (e.g., ``math``). This uses the global namespace of the
module. If the module is one of the above known modules, it will
also use the corresponding printer and namespace mapping
(i.e., ``modules=numpy`` is equivalent to ``modules="numpy"``).
- A dictionary that maps names of SymPy functions to arbitrary
functions
(e.g., ``{'sin': custom_sin}``).
- A list that contains a mix of the arguments above, with higher
priority given to entries appearing first
(e.g., to use the NumPy module but override the ``sin`` function
with a custom version, you can use
``[{'sin': custom_sin}, 'numpy']``).
dummify : bool, optional
Whether or not the variables in the provided expression that are not
valid Python identifiers are substituted with dummy symbols.
This allows for undefined functions like ``Function('f')(t)`` to be
supplied as arguments. By default, the variables are only dummified
if they are not valid Python identifiers.
Set ``dummify=True`` to replace all arguments with dummy symbols
(if ``args`` is not a string) - for example, to ensure that the
arguments do not redefine any built-in names.
cse : bool, or callable, optional
Large expressions can be computed more efficiently when
common subexpressions are identified and precomputed before
being used multiple time. Finding the subexpressions will make
creation of the 'lambdify' function slower, however.
When ``True``, ``sympy.simplify.cse`` is used, otherwise (the default)
the user may pass a function matching the ``cse`` signature.
docstring_limit : int or None
When lambdifying large expressions, a significant proportion of the time
spent inside ``lambdify`` is spent producing a string representation of
the expression for use in the automatically generated docstring of the
returned function. For expressions containing hundreds or more nodes the
resulting docstring often becomes so long and dense that it is difficult
to read. To reduce the runtime of lambdify, the rendering of the full
expression inside the docstring can be disabled.
When ``None``, the full expression is rendered in the docstring. When
``0`` or a negative ``int``, an ellipsis is rendering in the docstring
instead of the expression. When a strictly positive ``int``, if the
number of nodes in the expression exceeds ``docstring_limit`` an
ellipsis is rendered in the docstring, otherwise a string representation
of the expression is rendered as normal. The default is ``1000``.
Examples
========
>>> from sympy.utilities.lambdify import implemented_function
>>> from sympy import sqrt, sin, Matrix
>>> from sympy import Function
>>> from sympy.abc import w, x, y, z
>>> f = lambdify(x, x**2)
>>> f(2)
4
>>> f = lambdify((x, y, z), [z, y, x])
>>> f(1,2,3)
[3, 2, 1]
>>> f = lambdify(x, sqrt(x))
>>> f(4)
2.0
>>> f = lambdify((x, y), sin(x*y)**2)
>>> f(0, 5)
0.0
>>> row = lambdify((x, y), Matrix((x, x + y)).T, modules='sympy')
>>> row(1, 2)
Matrix([[1, 3]])
``lambdify`` can be used to translate SymPy expressions into mpmath
functions. This may be preferable to using ``evalf`` (which uses mpmath on
the backend) in some cases.
>>> f = lambdify(x, sin(x), 'mpmath')
>>> f(1)
0.8414709848078965
Tuple arguments are handled and the lambdified function should
be called with the same type of arguments as were used to create
the function:
>>> f = lambdify((x, (y, z)), x + y)
>>> f(1, (2, 4))
3
The ``flatten`` function can be used to always work with flattened
arguments:
>>> from sympy.utilities.iterables import flatten
>>> args = w, (x, (y, z))
>>> vals = 1, (2, (3, 4))
>>> f = lambdify(flatten(args), w + x + y + z)
>>> f(*flatten(vals))
10
Functions present in ``expr`` can also carry their own numerical
implementations, in a callable attached to the ``_imp_`` attribute. This
can be used with undefined functions using the ``implemented_function``
factory:
>>> f = implemented_function(Function('f'), lambda x: x+1)
>>> func = lambdify(x, f(x))
>>> func(4)
5
``lambdify`` always prefers ``_imp_`` implementations to implementations
in other namespaces, unless the ``use_imps`` input parameter is False.
Usage with Tensorflow:
>>> import tensorflow as tf
>>> from sympy import Max, sin, lambdify
>>> from sympy.abc import x
>>> f = Max(x, sin(x))
>>> func = lambdify(x, f, 'tensorflow')
After tensorflow v2, eager execution is enabled by default.
If you want to get the compatible result across tensorflow v1 and v2
as same as this tutorial, run this line.
>>> tf.compat.v1.enable_eager_execution()
If you have eager execution enabled, you can get the result out
immediately as you can use numpy.
If you pass tensorflow objects, you may get an ``EagerTensor``
object instead of value.
>>> result = func(tf.constant(1.0))
>>> print(result)
tf.Tensor(1.0, shape=(), dtype=float32)
>>> print(result.__class__)
<class 'tensorflow.python.framework.ops.EagerTensor'>
You can use ``.numpy()`` to get the numpy value of the tensor.
>>> result.numpy()
1.0
>>> var = tf.Variable(2.0)
>>> result = func(var) # also works for tf.Variable and tf.Placeholder
>>> result.numpy()
2.0
And it works with any shape array.
>>> tensor = tf.constant([[1.0, 2.0], [3.0, 4.0]])
>>> result = func(tensor)
>>> result.numpy()
[[1. 2.]
[3. 4.]]
Notes
=====
- For functions involving large array calculations, numexpr can provide a
significant speedup over numpy. Please note that the available functions
for numexpr are more limited than numpy but can be expanded with
``implemented_function`` and user defined subclasses of Function. If
specified, numexpr may be the only option in modules. The official list
of numexpr functions can be found at:
https://numexpr.readthedocs.io/projects/NumExpr3/en/latest/user_guide.html#supported-functions
- In the above examples, the generated functions can accept scalar
values or numpy arrays as arguments. However, in some cases
the generated function relies on the input being a numpy array:
>>> import numpy
>>> from sympy import Piecewise
>>> from sympy.testing.pytest import ignore_warnings
>>> f = lambdify(x, Piecewise((x, x <= 1), (1/x, x > 1)), "numpy")
>>> with ignore_warnings(RuntimeWarning):
... f(numpy.array([-1, 0, 1, 2]))
[-1. 0. 1. 0.5]
>>> f(0)
Traceback (most recent call last):
...
ZeroDivisionError: division by zero
In such cases, the input should be wrapped in a numpy array:
>>> with ignore_warnings(RuntimeWarning):
... float(f(numpy.array([0])))
0.0
Or if numpy functionality is not required another module can be used:
>>> f = lambdify(x, Piecewise((x, x <= 1), (1/x, x > 1)), "math")
>>> f(0)
0
.. _lambdify-how-it-works:
How it works
============
When using this function, it helps a great deal to have an idea of what it
is doing. At its core, lambdify is nothing more than a namespace
translation, on top of a special printer that makes some corner cases work
properly.
To understand lambdify, first we must properly understand how Python
namespaces work. Say we had two files. One called ``sin_cos_sympy.py``,
with
.. code:: python
# sin_cos_sympy.py
from sympy.functions.elementary.trigonometric import (cos, sin)
def sin_cos(x):
return sin(x) + cos(x)
and one called ``sin_cos_numpy.py`` with
.. code:: python
# sin_cos_numpy.py
from numpy import sin, cos
def sin_cos(x):
return sin(x) + cos(x)
The two files define an identical function ``sin_cos``. However, in the
first file, ``sin`` and ``cos`` are defined as the SymPy ``sin`` and
``cos``. In the second, they are defined as the NumPy versions.
If we were to import the first file and use the ``sin_cos`` function, we
would get something like
>>> from sin_cos_sympy import sin_cos # doctest: +SKIP
>>> sin_cos(1) # doctest: +SKIP
cos(1) + sin(1)
On the other hand, if we imported ``sin_cos`` from the second file, we
would get
>>> from sin_cos_numpy import sin_cos # doctest: +SKIP
>>> sin_cos(1) # doctest: +SKIP
1.38177329068
In the first case we got a symbolic output, because it used the symbolic
``sin`` and ``cos`` functions from SymPy. In the second, we got a numeric
result, because ``sin_cos`` used the numeric ``sin`` and ``cos`` functions
from NumPy. But notice that the versions of ``sin`` and ``cos`` that were
used was not inherent to the ``sin_cos`` function definition. Both
``sin_cos`` definitions are exactly the same. Rather, it was based on the
names defined at the module where the ``sin_cos`` function was defined.
The key point here is that when function in Python references a name that
is not defined in the function, that name is looked up in the "global"
namespace of the module where that function is defined.
Now, in Python, we can emulate this behavior without actually writing a
file to disk using the ``exec`` function. ``exec`` takes a string
containing a block of Python code, and a dictionary that should contain
the global variables of the module. It then executes the code "in" that
dictionary, as if it were the module globals. The following is equivalent
to the ``sin_cos`` defined in ``sin_cos_sympy.py``:
>>> import sympy
>>> module_dictionary = {'sin': sympy.sin, 'cos': sympy.cos}
>>> exec('''
... def sin_cos(x):
... return sin(x) + cos(x)
... ''', module_dictionary)
>>> sin_cos = module_dictionary['sin_cos']
>>> sin_cos(1)
cos(1) + sin(1)
and similarly with ``sin_cos_numpy``:
>>> import numpy
>>> module_dictionary = {'sin': numpy.sin, 'cos': numpy.cos}
>>> exec('''
... def sin_cos(x):
... return sin(x) + cos(x)
... ''', module_dictionary)
>>> sin_cos = module_dictionary['sin_cos']
>>> sin_cos(1)
1.38177329068
So now we can get an idea of how ``lambdify`` works. The name "lambdify"
comes from the fact that we can think of something like ``lambdify(x,
sin(x) + cos(x), 'numpy')`` as ``lambda x: sin(x) + cos(x)``, where
``sin`` and ``cos`` come from the ``numpy`` namespace. This is also why
the symbols argument is first in ``lambdify``, as opposed to most SymPy
functions where it comes after the expression: to better mimic the
``lambda`` keyword.
``lambdify`` takes the input expression (like ``sin(x) + cos(x)``) and
1. Converts it to a string
2. Creates a module globals dictionary based on the modules that are
passed in (by default, it uses the NumPy module)
3. Creates the string ``"def func({vars}): return {expr}"``, where ``{vars}`` is the
list of variables separated by commas, and ``{expr}`` is the string
created in step 1., then ``exec``s that string with the module globals
namespace and returns ``func``.
In fact, functions returned by ``lambdify`` support inspection. So you can
see exactly how they are defined by using ``inspect.getsource``, or ``??`` if you
are using IPython or the Jupyter notebook.
>>> f = lambdify(x, sin(x) + cos(x))
>>> import inspect
>>> print(inspect.getsource(f))
def _lambdifygenerated(x):
return sin(x) + cos(x)
This shows us the source code of the function, but not the namespace it
was defined in. We can inspect that by looking at the ``__globals__``
attribute of ``f``:
>>> f.__globals__['sin']
<ufunc 'sin'>
>>> f.__globals__['cos']
<ufunc 'cos'>
>>> f.__globals__['sin'] is numpy.sin
True
This shows us that ``sin`` and ``cos`` in the namespace of ``f`` will be
``numpy.sin`` and ``numpy.cos``.
Note that there are some convenience layers in each of these steps, but at
the core, this is how ``lambdify`` works. Step 1 is done using the
``LambdaPrinter`` printers defined in the printing module (see
:mod:`sympy.printing.lambdarepr`). This allows different SymPy expressions
to define how they should be converted to a string for different modules.
You can change which printer ``lambdify`` uses by passing a custom printer
in to the ``printer`` argument.
Step 2 is augmented by certain translations. There are default
translations for each module, but you can provide your own by passing a
list to the ``modules`` argument. For instance,
>>> def mysin(x):
... print('taking the sin of', x)
... return numpy.sin(x)
...
>>> f = lambdify(x, sin(x), [{'sin': mysin}, 'numpy'])
>>> f(1)
taking the sin of 1
0.8414709848078965
The globals dictionary is generated from the list by merging the
dictionary ``{'sin': mysin}`` and the module dictionary for NumPy. The
merging is done so that earlier items take precedence, which is why
``mysin`` is used above instead of ``numpy.sin``.
If you want to modify the way ``lambdify`` works for a given function, it
is usually easiest to do so by modifying the globals dictionary as such.
In more complicated cases, it may be necessary to create and pass in a
custom printer.
Finally, step 3 is augmented with certain convenience operations, such as
the addition of a docstring.
Understanding how ``lambdify`` works can make it easier to avoid certain
gotchas when using it. For instance, a common mistake is to create a
lambdified function for one module (say, NumPy), and pass it objects from
another (say, a SymPy expression).
For instance, say we create
>>> from sympy.abc import x
>>> f = lambdify(x, x + 1, 'numpy')
Now if we pass in a NumPy array, we get that array plus 1
>>> import numpy
>>> a = numpy.array([1, 2])
>>> f(a)
[2 3]
But what happens if you make the mistake of passing in a SymPy expression
instead of a NumPy array:
>>> f(x + 1)
x + 2
This worked, but it was only by accident. Now take a different lambdified
function:
>>> from sympy import sin
>>> g = lambdify(x, x + sin(x), 'numpy')
This works as expected on NumPy arrays:
>>> g(a)
[1.84147098 2.90929743]
But if we try to pass in a SymPy expression, it fails
>>> try:
... g(x + 1)
... # NumPy release after 1.17 raises TypeError instead of
... # AttributeError
... except (AttributeError, TypeError):
... raise AttributeError() # doctest: +IGNORE_EXCEPTION_DETAIL
Traceback (most recent call last):
...
AttributeError:
Now, let's look at what happened. The reason this fails is that ``g``
calls ``numpy.sin`` on the input expression, and ``numpy.sin`` does not
know how to operate on a SymPy object. **As a general rule, NumPy
functions do not know how to operate on SymPy expressions, and SymPy
functions do not know how to operate on NumPy arrays. This is why lambdify
exists: to provide a bridge between SymPy and NumPy.**
However, why is it that ``f`` did work? That's because ``f`` does not call
any functions, it only adds 1. So the resulting function that is created,
``def _lambdifygenerated(x): return x + 1`` does not depend on the globals
namespace it is defined in. Thus it works, but only by accident. A future
version of ``lambdify`` may remove this behavior.
Be aware that certain implementation details described here may change in
future versions of SymPy. The API of passing in custom modules and
printers will not change, but the details of how a lambda function is
created may change. However, the basic idea will remain the same, and
understanding it will be helpful to understanding the behavior of
lambdify.
**In general: you should create lambdified functions for one module (say,
NumPy), and only pass it input types that are compatible with that module
(say, NumPy arrays).** Remember that by default, if the ``module``
argument is not provided, ``lambdify`` creates functions using the NumPy
and SciPy namespaces.
"""
from sympy.core.symbol import Symbol
from sympy.core.expr import Expr
# If the user hasn't specified any modules, use what is available.
if modules is None:
try:
_import("scipy")
except ImportError:
try:
_import("numpy")
except ImportError:
# Use either numpy (if available) or python.math where possible.
# XXX: This leads to different behaviour on different systems and
# might be the reason for irreproducible errors.
modules = ["math", "mpmath", "sympy"]
else:
modules = ["numpy"]
else:
modules = ["numpy", "scipy"]
# Get the needed namespaces.
namespaces = []
# First find any function implementations
if use_imps:
namespaces.append(_imp_namespace(expr))
# Check for dict before iterating
if isinstance(modules, (dict, str)) or not hasattr(modules, '__iter__'):
namespaces.append(modules)
else:
# consistency check
if _module_present('numexpr', modules) and len(modules) > 1:
raise TypeError("numexpr must be the only item in 'modules'")
namespaces += list(modules)
# fill namespace with first having highest priority
namespace = {}
for m in namespaces[::-1]:
buf = _get_namespace(m)
namespace.update(buf)
if hasattr(expr, "atoms"):
#Try if you can extract symbols from the expression.
#Move on if expr.atoms in not implemented.
syms = expr.atoms(Symbol)
for term in syms:
namespace.update({str(term): term})
if printer is None:
if _module_present('mpmath', namespaces):
from sympy.printing.pycode import MpmathPrinter as Printer # type: ignore
elif _module_present('scipy', namespaces):
from sympy.printing.numpy import SciPyPrinter as Printer # type: ignore
elif _module_present('numpy', namespaces):
from sympy.printing.numpy import NumPyPrinter as Printer # type: ignore
elif _module_present('cupy', namespaces):
from sympy.printing.numpy import CuPyPrinter as Printer # type: ignore
elif _module_present('jax', namespaces):
from sympy.printing.numpy import JaxPrinter as Printer # type: ignore
elif _module_present('numexpr', namespaces):
from sympy.printing.lambdarepr import NumExprPrinter as Printer # type: ignore
elif _module_present('tensorflow', namespaces):
from sympy.printing.tensorflow import TensorflowPrinter as Printer # type: ignore
elif _module_present('sympy', namespaces):
from sympy.printing.pycode import SymPyPrinter as Printer # type: ignore
else:
from sympy.printing.pycode import PythonCodePrinter as Printer # type: ignore
user_functions = {}
for m in namespaces[::-1]:
if isinstance(m, dict):
for k in m:
user_functions[k] = k
printer = Printer({'fully_qualified_modules': False, 'inline': True,
'allow_unknown_functions': True,
'user_functions': user_functions})
if isinstance(args, set):
sympy_deprecation_warning(
"""
Passing the function arguments to lambdify() as a set is deprecated. This
leads to unpredictable results since sets are unordered. Instead, use a list
or tuple for the function arguments.
""",
deprecated_since_version="1.6.3",
active_deprecations_target="deprecated-lambdify-arguments-set",
)
# Get the names of the args, for creating a docstring
iterable_args = (args,) if isinstance(args, Expr) else args
names = []
# Grab the callers frame, for getting the names by inspection (if needed)
callers_local_vars = inspect.currentframe().f_back.f_locals.items() # type: ignore
for n, var in enumerate(iterable_args):
if hasattr(var, 'name'):
names.append(var.name)
else:
# It's an iterable. Try to get name by inspection of calling frame.
name_list = [var_name for var_name, var_val in callers_local_vars
if var_val is var]
if len(name_list) == 1:
names.append(name_list[0])
else:
# Cannot infer name with certainty. arg_# will have to do.
names.append('arg_' + str(n))
# Create the function definition code and execute it
funcname = '_lambdifygenerated'
if _module_present('tensorflow', namespaces):
funcprinter = _TensorflowEvaluatorPrinter(printer, dummify)
else:
funcprinter = _EvaluatorPrinter(printer, dummify)
if cse == True:
from sympy.simplify.cse_main import cse as _cse
cses, _expr = _cse(expr, list=False)
elif callable(cse):
cses, _expr = cse(expr)
else:
cses, _expr = (), expr
funcstr = funcprinter.doprint(funcname, iterable_args, _expr, cses=cses)
# Collect the module imports from the code printers.
imp_mod_lines = []
for mod, keys in (getattr(printer, 'module_imports', None) or {}).items():
for k in keys:
if k not in namespace:
ln = "from %s import %s" % (mod, k)
try:
exec(ln, {}, namespace)
except ImportError:
# Tensorflow 2.0 has issues with importing a specific
# function from its submodule.
# https://github.com/tensorflow/tensorflow/issues/33022
ln = "%s = %s.%s" % (k, mod, k)
exec(ln, {}, namespace)
imp_mod_lines.append(ln)
# Provide lambda expression with builtins, and compatible implementation of range
namespace.update({'builtins':builtins, 'range':range})
funclocals = {}
global _lambdify_generated_counter
filename = '<lambdifygenerated-%s>' % _lambdify_generated_counter
_lambdify_generated_counter += 1
c = compile(funcstr, filename, 'exec')
exec(c, namespace, funclocals)
# mtime has to be None or else linecache.checkcache will remove it
linecache.cache[filename] = (len(funcstr), None, funcstr.splitlines(True), filename) # type: ignore
func = funclocals[funcname]
# Apply the docstring
sig = "func({})".format(", ".join(str(i) for i in names))
sig = textwrap.fill(sig, subsequent_indent=' '*8)
if _too_large_for_docstring(expr, docstring_limit):
expr_str = 'EXPRESSION REDACTED DUE TO LENGTH'
src_str = 'SOURCE CODE REDACTED DUE TO LENGTH'
else:
expr_str = str(expr)
if len(expr_str) > 78:
expr_str = textwrap.wrap(expr_str, 75)[0] + '...'
src_str = funcstr
func.__doc__ = (
"Created with lambdify. Signature:\n\n"
"{sig}\n\n"
"Expression:\n\n"
"{expr}\n\n"
"Source code:\n\n"
"{src}\n\n"
"Imported modules:\n\n"
"{imp_mods}"
).format(sig=sig, expr=expr_str, src=src_str, imp_mods='\n'.join(imp_mod_lines))
return func
def _module_present(modname, modlist):
if modname in modlist:
return True
for m in modlist:
if hasattr(m, '__name__') and m.__name__ == modname:
return True
return False
def _get_namespace(m):
"""
This is used by _lambdify to parse its arguments.
"""
if isinstance(m, str):
_import(m)
return MODULES[m][0]
elif isinstance(m, dict):
return m
elif hasattr(m, "__dict__"):
return m.__dict__
else:
raise TypeError("Argument must be either a string, dict or module but it is: %s" % m)
def _recursive_to_string(doprint, arg):
"""Functions in lambdify accept both SymPy types and non-SymPy types such as python
lists and tuples. This method ensures that we only call the doprint method of the
printer with SymPy types (so that the printer safely can use SymPy-methods)."""
from sympy.matrices.common import MatrixOperations
from sympy.core.basic import Basic
if isinstance(arg, (Basic, MatrixOperations)):
return doprint(arg)
elif iterable(arg):
if isinstance(arg, list):
left, right = "[", "]"
elif isinstance(arg, tuple):
left, right = "(", ",)"
else:
raise NotImplementedError("unhandled type: %s, %s" % (type(arg), arg))
return left +', '.join(_recursive_to_string(doprint, e) for e in arg) + right
elif isinstance(arg, str):
return arg
else:
return doprint(arg)
def lambdastr(args, expr, printer=None, dummify=None):
"""
Returns a string that can be evaluated to a lambda function.
Examples
========
>>> from sympy.abc import x, y, z
>>> from sympy.utilities.lambdify import lambdastr
>>> lambdastr(x, x**2)
'lambda x: (x**2)'
>>> lambdastr((x,y,z), [z,y,x])
'lambda x,y,z: ([z, y, x])'
Although tuples may not appear as arguments to lambda in Python 3,
lambdastr will create a lambda function that will unpack the original
arguments so that nested arguments can be handled:
>>> lambdastr((x, (y, z)), x + y)
'lambda _0,_1: (lambda x,y,z: (x + y))(_0,_1[0],_1[1])'
"""
# Transforming everything to strings.
from sympy.matrices import DeferredVector
from sympy.core.basic import Basic
from sympy.core.function import (Derivative, Function)
from sympy.core.symbol import (Dummy, Symbol)
from sympy.core.sympify import sympify
if printer is not None:
if inspect.isfunction(printer):
lambdarepr = printer
else:
if inspect.isclass(printer):
lambdarepr = lambda expr: printer().doprint(expr)
else:
lambdarepr = lambda expr: printer.doprint(expr)
else:
#XXX: This has to be done here because of circular imports
from sympy.printing.lambdarepr import lambdarepr
def sub_args(args, dummies_dict):
if isinstance(args, str):
return args
elif isinstance(args, DeferredVector):
return str(args)
elif iterable(args):
dummies = flatten([sub_args(a, dummies_dict) for a in args])
return ",".join(str(a) for a in dummies)
else:
# replace these with Dummy symbols
if isinstance(args, (Function, Symbol, Derivative)):
dummies = Dummy()
dummies_dict.update({args : dummies})
return str(dummies)
else:
return str(args)
def sub_expr(expr, dummies_dict):
expr = sympify(expr)
# dict/tuple are sympified to Basic
if isinstance(expr, Basic):
expr = expr.xreplace(dummies_dict)
# list is not sympified to Basic
elif isinstance(expr, list):
expr = [sub_expr(a, dummies_dict) for a in expr]
return expr
# Transform args
def isiter(l):
return iterable(l, exclude=(str, DeferredVector, NotIterable))
def flat_indexes(iterable):
n = 0
for el in iterable:
if isiter(el):
for ndeep in flat_indexes(el):
yield (n,) + ndeep
else:
yield (n,)
n += 1
if dummify is None:
dummify = any(isinstance(a, Basic) and
a.atoms(Function, Derivative) for a in (
args if isiter(args) else [args]))
if isiter(args) and any(isiter(i) for i in args):
dum_args = [str(Dummy(str(i))) for i in range(len(args))]
indexed_args = ','.join([
dum_args[ind[0]] + ''.join(["[%s]" % k for k in ind[1:]])
for ind in flat_indexes(args)])
lstr = lambdastr(flatten(args), expr, printer=printer, dummify=dummify)
return 'lambda %s: (%s)(%s)' % (','.join(dum_args), lstr, indexed_args)
dummies_dict = {}
if dummify:
args = sub_args(args, dummies_dict)
else:
if isinstance(args, str):
pass
elif iterable(args, exclude=DeferredVector):
args = ",".join(str(a) for a in args)
# Transform expr
if dummify:
if isinstance(expr, str):
pass
else:
expr = sub_expr(expr, dummies_dict)
expr = _recursive_to_string(lambdarepr, expr)
return "lambda %s: (%s)" % (args, expr)
class _EvaluatorPrinter:
def __init__(self, printer=None, dummify=False):
self._dummify = dummify
#XXX: This has to be done here because of circular imports
from sympy.printing.lambdarepr import LambdaPrinter
if printer is None:
printer = LambdaPrinter()
if inspect.isfunction(printer):
self._exprrepr = printer
else:
if inspect.isclass(printer):
printer = printer()
self._exprrepr = printer.doprint
#if hasattr(printer, '_print_Symbol'):
# symbolrepr = printer._print_Symbol
#if hasattr(printer, '_print_Dummy'):
# dummyrepr = printer._print_Dummy
# Used to print the generated function arguments in a standard way
self._argrepr = LambdaPrinter().doprint
def doprint(self, funcname, args, expr, *, cses=()):
"""
Returns the function definition code as a string.
"""
from sympy.core.symbol import Dummy
funcbody = []
if not iterable(args):
args = [args]
if cses:
subvars, subexprs = zip(*cses)
exprs = [expr] + list(subexprs)
argstrs, exprs = self._preprocess(args, exprs)
expr, subexprs = exprs[0], exprs[1:]
cses = zip(subvars, subexprs)
else:
argstrs, expr = self._preprocess(args, expr)
# Generate argument unpacking and final argument list
funcargs = []
unpackings = []
for argstr in argstrs:
if iterable(argstr):
funcargs.append(self._argrepr(Dummy()))
unpackings.extend(self._print_unpacking(argstr, funcargs[-1]))
else:
funcargs.append(argstr)
funcsig = 'def {}({}):'.format(funcname, ', '.join(funcargs))
# Wrap input arguments before unpacking
funcbody.extend(self._print_funcargwrapping(funcargs))
funcbody.extend(unpackings)
for s, e in cses:
if e is None:
funcbody.append('del {}'.format(s))
else:
funcbody.append('{} = {}'.format(s, self._exprrepr(e)))
str_expr = _recursive_to_string(self._exprrepr, expr)
if '\n' in str_expr:
str_expr = '({})'.format(str_expr)
funcbody.append('return {}'.format(str_expr))
funclines = [funcsig]
funclines.extend([' ' + line for line in funcbody])
return '\n'.join(funclines) + '\n'
@classmethod
def _is_safe_ident(cls, ident):
return isinstance(ident, str) and ident.isidentifier() \
and not keyword.iskeyword(ident)
def _preprocess(self, args, expr):
"""Preprocess args, expr to replace arguments that do not map
to valid Python identifiers.
Returns string form of args, and updated expr.
"""
from sympy.core.basic import Basic
from sympy.core.sorting import ordered
from sympy.core.function import (Derivative, Function)
from sympy.core.symbol import Dummy, uniquely_named_symbol
from sympy.matrices import DeferredVector
from sympy.core.expr import Expr
# Args of type Dummy can cause name collisions with args
# of type Symbol. Force dummify of everything in this
# situation.
dummify = self._dummify or any(
isinstance(arg, Dummy) for arg in flatten(args))
argstrs = [None]*len(args)
for arg, i in reversed(list(ordered(zip(args, range(len(args)))))):
if iterable(arg):
s, expr = self._preprocess(arg, expr)
elif isinstance(arg, DeferredVector):
s = str(arg)
elif isinstance(arg, Basic) and arg.is_symbol:
s = self._argrepr(arg)
if dummify or not self._is_safe_ident(s):
dummy = Dummy()
if isinstance(expr, Expr):
dummy = uniquely_named_symbol(
dummy.name, expr, modify=lambda s: '_' + s)
s = self._argrepr(dummy)
expr = self._subexpr(expr, {arg: dummy})
elif dummify or isinstance(arg, (Function, Derivative)):
dummy = Dummy()
s = self._argrepr(dummy)
expr = self._subexpr(expr, {arg: dummy})
else:
s = str(arg)
argstrs[i] = s
return argstrs, expr
def _subexpr(self, expr, dummies_dict):
from sympy.matrices import DeferredVector
from sympy.core.sympify import sympify
expr = sympify(expr)
xreplace = getattr(expr, 'xreplace', None)
if xreplace is not None:
expr = xreplace(dummies_dict)
else:
if isinstance(expr, DeferredVector):
pass
elif isinstance(expr, dict):
k = [self._subexpr(sympify(a), dummies_dict) for a in expr.keys()]
v = [self._subexpr(sympify(a), dummies_dict) for a in expr.values()]
expr = dict(zip(k, v))
elif isinstance(expr, tuple):
expr = tuple(self._subexpr(sympify(a), dummies_dict) for a in expr)
elif isinstance(expr, list):
expr = [self._subexpr(sympify(a), dummies_dict) for a in expr]
return expr
def _print_funcargwrapping(self, args):
"""Generate argument wrapping code.
args is the argument list of the generated function (strings).
Return value is a list of lines of code that will be inserted at
the beginning of the function definition.
"""
return []
def _print_unpacking(self, unpackto, arg):
"""Generate argument unpacking code.
arg is the function argument to be unpacked (a string), and
unpackto is a list or nested lists of the variable names (strings) to
unpack to.
"""
def unpack_lhs(lvalues):
return '[{}]'.format(', '.join(
unpack_lhs(val) if iterable(val) else val for val in lvalues))
return ['{} = {}'.format(unpack_lhs(unpackto), arg)]
class _TensorflowEvaluatorPrinter(_EvaluatorPrinter):
def _print_unpacking(self, lvalues, rvalue):
"""Generate argument unpacking code.
This method is used when the input value is not interable,
but can be indexed (see issue #14655).
"""
def flat_indexes(elems):
n = 0
for el in elems:
if iterable(el):
for ndeep in flat_indexes(el):
yield (n,) + ndeep
else:
yield (n,)
n += 1
indexed = ', '.join('{}[{}]'.format(rvalue, ']['.join(map(str, ind)))
for ind in flat_indexes(lvalues))
return ['[{}] = [{}]'.format(', '.join(flatten(lvalues)), indexed)]
def _imp_namespace(expr, namespace=None):
""" Return namespace dict with function implementations
We need to search for functions in anything that can be thrown at
us - that is - anything that could be passed as ``expr``. Examples
include SymPy expressions, as well as tuples, lists and dicts that may
contain SymPy expressions.
Parameters
----------
expr : object
Something passed to lambdify, that will generate valid code from
``str(expr)``.
namespace : None or mapping
Namespace to fill. None results in new empty dict
Returns
-------
namespace : dict
dict with keys of implemented function names within ``expr`` and
corresponding values being the numerical implementation of
function
Examples
========
>>> from sympy.abc import x
>>> from sympy.utilities.lambdify import implemented_function, _imp_namespace
>>> from sympy import Function
>>> f = implemented_function(Function('f'), lambda x: x+1)
>>> g = implemented_function(Function('g'), lambda x: x*10)
>>> namespace = _imp_namespace(f(g(x)))
>>> sorted(namespace.keys())
['f', 'g']
"""
# Delayed import to avoid circular imports
from sympy.core.function import FunctionClass
if namespace is None:
namespace = {}
# tuples, lists, dicts are valid expressions
if is_sequence(expr):
for arg in expr:
_imp_namespace(arg, namespace)
return namespace
elif isinstance(expr, dict):
for key, val in expr.items():
# functions can be in dictionary keys
_imp_namespace(key, namespace)
_imp_namespace(val, namespace)
return namespace
# SymPy expressions may be Functions themselves
func = getattr(expr, 'func', None)
if isinstance(func, FunctionClass):
imp = getattr(func, '_imp_', None)
if imp is not None:
name = expr.func.__name__
if name in namespace and namespace[name] != imp:
raise ValueError('We found more than one '
'implementation with name '
'"%s"' % name)
namespace[name] = imp
# and / or they may take Functions as arguments
if hasattr(expr, 'args'):
for arg in expr.args:
_imp_namespace(arg, namespace)
return namespace
def implemented_function(symfunc, implementation):
""" Add numerical ``implementation`` to function ``symfunc``.
``symfunc`` can be an ``UndefinedFunction`` instance, or a name string.
In the latter case we create an ``UndefinedFunction`` instance with that
name.
Be aware that this is a quick workaround, not a general method to create
special symbolic functions. If you want to create a symbolic function to be
used by all the machinery of SymPy you should subclass the ``Function``
class.
Parameters
----------
symfunc : ``str`` or ``UndefinedFunction`` instance
If ``str``, then create new ``UndefinedFunction`` with this as
name. If ``symfunc`` is an Undefined function, create a new function
with the same name and the implemented function attached.
implementation : callable
numerical implementation to be called by ``evalf()`` or ``lambdify``
Returns
-------
afunc : sympy.FunctionClass instance
function with attached implementation
Examples
========
>>> from sympy.abc import x
>>> from sympy.utilities.lambdify import implemented_function
>>> from sympy import lambdify
>>> f = implemented_function('f', lambda x: x+1)
>>> lam_f = lambdify(x, f(x))
>>> lam_f(4)
5
"""
# Delayed import to avoid circular imports
from sympy.core.function import UndefinedFunction
# if name, create function to hold implementation
kwargs = {}
if isinstance(symfunc, UndefinedFunction):
kwargs = symfunc._kwargs
symfunc = symfunc.__name__
if isinstance(symfunc, str):
# Keyword arguments to UndefinedFunction are added as attributes to
# the created class.
symfunc = UndefinedFunction(
symfunc, _imp_=staticmethod(implementation), **kwargs)
elif not isinstance(symfunc, UndefinedFunction):
raise ValueError(filldedent('''
symfunc should be either a string or
an UndefinedFunction instance.'''))
return symfunc
def _too_large_for_docstring(expr, limit):
"""Decide whether an ``Expr`` is too large to be fully rendered in a
``lambdify`` docstring.
This is a fast alternative to ``count_ops``, which can become prohibitively
slow for large expressions, because in this instance we only care whether
``limit`` is exceeded rather than counting the exact number of nodes in the
expression.
Parameters
==========
expr : ``Expr``, (nested) ``list`` of ``Expr``, or ``Matrix``
The same objects that can be passed to the ``expr`` argument of
``lambdify``.
limit : ``int`` or ``None``
The threshold above which an expression contains too many nodes to be
usefully rendered in the docstring. If ``None`` then there is no limit.
Returns
=======
bool
``True`` if the number of nodes in the expression exceeds the limit,
``False`` otherwise.
Examples
========
>>> from sympy.abc import x, y, z
>>> from sympy.utilities.lambdify import _too_large_for_docstring
>>> expr = x
>>> _too_large_for_docstring(expr, None)
False
>>> _too_large_for_docstring(expr, 100)
False
>>> _too_large_for_docstring(expr, 1)
False
>>> _too_large_for_docstring(expr, 0)
True
>>> _too_large_for_docstring(expr, -1)
True
Does this split it?
>>> expr = [x, y, z]
>>> _too_large_for_docstring(expr, None)
False
>>> _too_large_for_docstring(expr, 100)
False
>>> _too_large_for_docstring(expr, 1)
True
>>> _too_large_for_docstring(expr, 0)
True
>>> _too_large_for_docstring(expr, -1)
True
>>> expr = [x, [y], z, [[x+y], [x*y*z, [x+y+z]]]]
>>> _too_large_for_docstring(expr, None)
False
>>> _too_large_for_docstring(expr, 100)
False
>>> _too_large_for_docstring(expr, 1)
True
>>> _too_large_for_docstring(expr, 0)
True
>>> _too_large_for_docstring(expr, -1)
True
>>> expr = ((x + y + z)**5).expand()
>>> _too_large_for_docstring(expr, None)
False
>>> _too_large_for_docstring(expr, 100)
True
>>> _too_large_for_docstring(expr, 1)
True
>>> _too_large_for_docstring(expr, 0)
True
>>> _too_large_for_docstring(expr, -1)
True
>>> from sympy import Matrix
>>> expr = Matrix([[(x + y + z), ((x + y + z)**2).expand(),
... ((x + y + z)**3).expand(), ((x + y + z)**4).expand()]])
>>> _too_large_for_docstring(expr, None)
False
>>> _too_large_for_docstring(expr, 1000)
False
>>> _too_large_for_docstring(expr, 100)
True
>>> _too_large_for_docstring(expr, 1)
True
>>> _too_large_for_docstring(expr, 0)
True
>>> _too_large_for_docstring(expr, -1)
True
"""
# Must be imported here to avoid a circular import error
from sympy.core.traversal import postorder_traversal
if limit is None:
return False
i = 0
for _ in postorder_traversal(expr):
i += 1
if i > limit:
return True
return False
Reference in New Issue View Git Blame Copy Permalink